DataSet-class: DataSet - class
Description
A simple list-based class for storing red and green channel foreground,
z-scores and the Ids.
Creating Objects from the Class
Objects can be created by calls of the form new("DataSet",sets, type)
where sets
is a list containing Cy3, Cy5, Id and Zscore and
type
is "ri" or "ma".
Objects are normally created by read.spot
.Slots/List Components
This class contains no slots (other than .Data
), but objects should contain the following list components:
Cy5 : |
numeric matrix containing the red (cy5) foreground
intensities. Rows correspond
to spots and columns to arrays. |
Cy3 : |
numeric matrix containing the green (cy3) foreground intensities. |
Id : |
Ids from all the observations. |
All of these matrices should have the same dimensions.Methods
This class inherits directly from class list
so any operation appropriate for lists will work on objects of this class.