Learn R Programming

genArise (version 1.48.0)

Microarray Analysis tool

Description

genArise is an easy to use tool for dual color microarray data. Its GUI-Tk based environment let any non-experienced user performs a basic, but not simple, data analysis just following a wizard. In addition it provides some tools for the developer.

Copy Link

Version

Version

1.48.0

License

file LICENSE

Maintainer

IFC Development Team

Last Published

February 15th, 2017

Functions in genArise (1.48.0)

Open previous project

Background Correction

DataSet - class

Read Dataset from File

Z-scores for identifying differential expression

genMerge: Post-Genomic Analysis

Remove Duplicates

Dye swap files selector

Image Plot of Microarray

Dataset: Little fragment of a microarray from IFC UNAM

Microarray from the IFC

Replicate filtering

Normalization by grid of Spot

Intensity-based filtering of array elements

Set-combinatorial analysis

Principal window of genAriseGUI

Write Z-score data

Classes Defined by this Package

Gene Annotations

GUI: Graphical User Interface

Return to the last window

Auxiliar function for post-analysis

Swap from Files

set.history.project

Save the history of a project

Data Visualization: M vs. A plot

Read Spot from File

set.path.project

set.path.project

Data Visualization: R vs I

Remove Duplicates

Reset the prj history file

set.project.properties

set.project.properties

Help of genArise

set.grid.properties

set.grid.properties

Create directorie for the project and its results and graphics

Z-score Data Visualization: R vs I or M vs A

analysis.window

Analysis.window

Global Normalization of Spot

Data Visualization: log2(Cy3) vs log2(Cy5)

Swap from Files