Learn R Programming

genArise (version 1.48.0)

make.swap: Swap analysis

Description

Read both files, but only extract the interested columns and create a Spot object.

Usage

make.swap(spot1, spot2, Cy3, Cy5, BgCy3, BgCy5, Id, Symdesc, header = FALSE, is.ifc = FALSE,envir,nr,nc)

Arguments

spot1
a connection or a character string giving the name of the file to read where each column represent the spot components.
spot2
a connection or a character string giving the name of the file to read where each column represent the spot components.
Cy3
column that represent Cy3.
Cy5
column that represent Cy5.
BgCy3
column that represent BgCy3.
BgCy5
column that represent BgCy5.
Id
column that represent Id.
Symdesc
optional identifier besides the Id column.
header
the logical value of the header input file
is.ifc
If is.ifc = TRUE this experiment was done in the Unit of Microarray from Cellular Phisiology Institute.
envir
Environment where are the genArise variables.
nr
Total of meta-row.
nc
Total of meta-column.

See Also

write.spot.