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genArise (version 1.48.0)

read.dataset: Read Dataset from File

Description

Read all file and extract the interested columns to create a DataSet object (this file contain the zscore with all the genes after the duplicates filtering and makes not distinction between up-regulated and down-regulated. If you want to make this distinction you must write the data with the function write.dataSet, but there is no way to read this files with this function).

Usage

read.dataset(file.name, cy3 = 1, cy5 = 2, ids = 3, symdesc = NULL, zscore = 4, type = 6, header = FALSE, sep = "\t")

Arguments

file.name
a connection or a character string giving the name of the file to read where each column represent the dataset components.
cy3
column that represent Cy3.
cy5
column that represent Cy5.
ids
column that represent Id.
symdesc
optional identifier besides Id column.
zscore
column that represent the zscore value.
type
column that represent if the experiment was performed as R vs I or M vs A.
header
the logical value of the header input file
sep
the separator in the inputfile

See Also

write.zscore.