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icesTAF (version 3.6.0)

Functions to Support the ICES Transparent Assessment Framework

Description

Functions to support the ICES Transparent Assessment Framework to organize data, methods, and results used in ICES assessments. ICES is an organization facilitating international collaboration in marine science.

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Version

Install

install.packages('icesTAF')

Monthly Downloads

647

Version

3.6.0

License

GPL-3

Maintainer

Colin Millar

Last Published

October 19th, 2020

Functions in icesTAF (3.6.0)

convert.spaces

Convert Spaces
catage.taf

Catch at Age in TAF Format
deps

List Dependencies
download.github

Download GitHub Repository
draft.software

Draft SOFTWARE.bib
draft.data.script

Draft or create a bootstrap data script
div

Divide Columns
clean

Clean TAF Directories
detach.packages

Detach Packages
dos2unix

Convert Line Endings
download

Download File
line.endings

Line Endings
long2taf

Convert Long Table to TAF Format
draft.data

Draft DATA.bib
is.r.package

Is R Package
icesTAF-package

Functions to Support the ICES Transparent Assessment Framework
os

Operating System
period

Period
make

Run R Script If Needed
read.bib

bibtex parser
long2xtab

Convert Long Table to Crosstab Format
plus

Rename Plus Group Column
rmdir

Remove Empty Directory
read.taf

Read TAF Table from File
file.encoding

File Encoding
flr2taf

Convert FLR Table to TAF Format
makeTAF

Run TAF Script If Needed
makeAll

Run All TAF Scripts as Needed
taf.library

TAF Library
taf.boot.path

Construct Path to a TAF bootstrap folder
xtab2taf

Convert Crosstab Table to TAF Format
taf.png

PNG Device
taf.colors

TAF Colors
taf.skeleton

TAF Skeleton
taf.sources

Extract sources from TAF *.bib file
taf.data.path

Construct Path to a TAF bootstrap data file
write.taf

Write TAF Table to File
xtab2long

Convert Crosstab Table to Long Format
taf.bootstrap

Bootstrap TAF Analysis
latin1.to.utf8

Convert File Encoding
mkdir

Create Directory
lim

Axis Limits
extract.subdir

Various TAF Helper Functions
get.remote.sha

Get Remote SHA
sourceTAF

Run TAF Script
zoom

Zoom
msg

Show Message
sourceDir

Source Directory
sourceAll

Run All TAF Scripts
taf.libPaths

Add TAF Library Path
taf.install

TAF Install
taf.roxygenise

Process a TAF repo with the taf roclet
summary.taf

Summary Results in TAF Format
taf.session

TAF Session
sam2taf

Convert SAM Table to TAF Format
taf.unzip

Unzip File
rnd

Round Columns
taf2xtab

Convert TAF Table to Crosstab Format
taf2long

Convert TAF Table to Long Format
tt

TAF Transpose
clean.data

Clean Data
clean.library

Clean TAF Library
catage.long

Catch at Age in Long Format
clean.software

Clean TAF Software
cp

Copy Files
catage.xtab

Catch at Age in Crosstab Format