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mRMRe (version 2.1.2.1)

Parallelized Minimum Redundancy, Maximum Relevance (mRMR)

Description

Computes mutual information matrices from continuous, categorical and survival variables, as well as feature selection with minimum redundancy, maximum relevance (mRMR) and a new ensemble mRMR technique. Published in De Jay et al. (2013) .

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Version

Install

install.packages('mRMRe')

Monthly Downloads

1,159

Version

2.1.2.1

License

Artistic-2.0

Maintainer

Benjamin HaibeKains

Last Published

April 25th, 2023

Functions in mRMRe (2.1.2.1)

mim

Accessor function for the 'mim' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object
featureNames

Accessor function for the 'featureNames' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object
get.thread.count

openMP Thread Count
get_thread_count

openMP Thread Count
sampleCount

Accessor function for the 'sampleCount' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
priors

Accessor function for the 'priors' information in a mRMRe.Data object
mRMRe.Filter-class

Class "mRMRe.Filter"
sampleNames

Accessor function for the 'sampleNames' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
mRMRe.Data-class

Class "mRMRe.Data"
visualize

mRMRe Network display
mRMRe.Network-class

Class "mRMRe.Network"
subsetData

Returns a mRMRe.Data object using a subset of the current mRMRe.Data object.
target

mRMR Target(s)
set_thread_count

openMP Thread Count
solutions

Basic result of the mRMR procedure
set.thread.count

openMP Thread Count
sampleStrata

Accessor function for the 'sampleStrata' information in a mRMRe.Data object
scores

mRMR Scores as per the MI gain for each feature
sampleWeights

Accessor function for the 'sampleWeights' information in a mRMRe.Data object
correlate

Function to compute various correlation measures between two variables
featureCount

Accessor function for the 'featureCount' information in a mRMRe.Data, mRMRe.Filter and mRMRe.Network object.
export_concordance_index

Export concordance index
featureData

Accessor function for the 'featureData' information in a mRMRe.Data object
cgps

Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
export_filters

Export filters
export_filters_bootstrap

Export filters bootstrap
export_mim

Export mim
adjacencyMatrix

Accessor function for the 'adjacencyMatrix' information in a mRMRe.Network object.
causality

Accessor function for the 'causality' information in a mRMRe.Filter and mRMRe.Network object.