Usage
plotMdGsa(index, block, cr = 0.95, pch = ".", pch.block = 20, lwd = 2,
col.all = "blue", col.block = "red", project = FALSE,
col.proj = "green", diagonals = FALSE, col.diag = "gray", ...)
Arguments
index
matrix or data frame with the two columns of ranking
statistics.
block
matrix or data frame with gene ids in the first column
and gene set ids in the second column.
cr
level of the confidence region.
pch
plotting character for all genes.
pch.block
plotting character for the genes in the gene set or
functional block.
lwd
line width. Used when drawing ellipses and other lines.
col.all
color used to represent all genes.
col.block
color used to represent the genes in the gene set
being plotted.
project
if TRUE projection over the axis are displayed for the
genes of the gene set.
col.proj
color used to plot the projection.
diagonals
if TRUE diagonals are plotted.
col.diag
color used to plot the diagonals.
...
arguments to be passed to plot