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metaSeq (version 1.12.0)

Meta-analysis of RNA-Seq count data in multiple studies

Description

The probabilities by one-sided NOISeq are combined by Fisher's method or Stouffer's method

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Version

Version

1.12.0

License

Artistic-2.0

Maintainer

Koki Tsuyuzaki

Last Published

February 15th, 2017

Functions in metaSeq (1.12.0)

Accelerate.NOISeq

Accelerating NOISeq
Stouffer.test

Stouffer's weighted Z-score method (Inverse normal method)
meta.oneside.noiseq

One-sided NOISeq for meta-analysis
text.busca_win

One of C++ re-implimated components in NOISeq
metaSeq-package

Meta-analysis of RNA-Seq count data in multiple studies
Result.Meta

Result of meta.oneside.noiseq against Brast Cancer data
Reset.Accelerate.NOISeq

Reset Accelerate.NOISeq function
Fisher.test

Fisher's combined probability method
pvals

P-values or probability calculated by DESeq, edgeR, baySeq, NOISeq, and DEGseq against StudyA
BreastCancer

Multiple RNA-Seq count data designed as Breast Cancer cell lines vs Normal cells
text.n.menor_win

One of C++ re-implimated components in NOISeq
meta.readData

readData function for meta-analysis
other.oneside.pvalues

Optional function for non-NOISeq method
text.busca_unix

One of C++ re-implimated components in NOISeq
StudyA

Count data of SRP008746
text.n.menor_unix

One of C++ re-implimated components in NOISeq