MInt (version 1.0.1)

Learn Direct Interaction Networks

Description

Learns direct microbe-microbe interaction networks using a Poisson multivariate-normal hierarchical model with an L1 penalized precision matrix. Optimization is carried out using an iterative conditional modes algorithm.

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Version

Install

install.packages('MInt')

Version

1.0.1

License

GPL-2

Maintainer

Surojit Biswas

Last Published

May 17th, 2015

Functions in MInt (1.0.1)

bootstrap

Bootstrap

mint

Construct MInt object

estimate

Estimate parameters