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mirIntegrator (version 1.2.0)

Integrating microRNA expression into signaling pathways for pathway analysis

Description

Tools for augmenting signaling pathways to perform pathway analysis of microRNA and mRNA expression levels.

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Version

Version

1.2.0

License

GPL (>=3)

Maintainer

Diana Diaz

Last Published

February 15th, 2017

Functions in mirIntegrator (1.2.0)

plot_augmented_pathway

Plotting of augmented pathway
smallest_pathway

Get the smallest pathway
names_pathways

List of KEGG signaling pathways' names.
pathways2pdf

Export augmented pathways to pdf
mirTarBase

MicroRNA-target interactions in human.
integrate_mir

Produce augmented pathways
GSE43592_miRNA

Top table of preprocessed miRNA of GSE43592 dataset.
plot_change

Plotting the change in pathways order
kegg_pathways

List of KEGG signaling pathways of human.
augmented_pathways

Signaling pathways augmented with miRNA.
GSE43592_mRNA

Top table of preprocessed mRNA of GSE43592 dataset.