moduleColor (version 1.8-4)

Basic Module Functions

Description

Methods for color labeling, calculation of eigengenes, merging of closely related modules.

Copy Link

Version

Install

install.packages('moduleColor')

Monthly Downloads

584

Version

1.8-4

License

GPL (>= 2)

Maintainer

Peter Langfelder

Last Published

April 9th, 2022

Functions in moduleColor (1.8-4)

moduleColor-package

Basic Module Functions

checkSets

Check structure and retrieve sizes of a group of datasets.

collectGarbage

Iterative garbage collection.

consensusMEDissimilarity

Consensus dissimilarity of module eigengenes.

fixDataStructure

Put single-set data into a form useful for multiset calculations.

moduleColor.getMEprefix

Get the prefix used to label module eigengenes.

labels2colors

Convert numerical labels to colors.

mergeCloseModules

Merge close modules of gene expression data.

consensusOrderMEs

Put close eigenvectors next to each other in several sets.

moduleColor.setMEprefix

Set the prefix used to label module eigengenes.

moduleColor.revisionDate

Get the last revision date of the package.

moduleColor.version

Get the version number of the package.

removeGreyME

Removes the grey eigengene from a given collection of eigengenes.

standardColors

Colors this library uses for labeling modules.

moduleNumber

Fixed-height cut of a dendrogram.

moduleEigengenes

Calculate module eigengenes.

orderMEs

Put close eigenvectors next to each other

plotHclustColors

Plot color rows corresponding to modules

normalizeLabels

Transform numerical labels into normal order.

multiSetMEs

Calculate module eigengenes.