msgl (version 2.3.9)

Err.msgl: Compute error rates

Description

Compute error rates. If type = "rate" then the misclassification rates will be computed. If type = "count" then the misclassification counts will be computed. If type = "loglike" then the negative log likelihood error will be computed.

Usage

# S3 method for msgl
Err(object, data = NULL, response = object$classes.true,
  classes = response, type = "rate", ...)

Arguments

object

a msgl object

data

a matrix of

response

a vector of classes

classes

a vector of classes

type

type of error rate

...

ignored

Value

a vector of error rates

Examples

# NOT RUN {
data(SimData)

x.all <- x
x.1 <- x[1:50,]
x.2 <- x[51:100,]
classes.all <- classes
classes.1 <- classes[1:50]
classes.2 <- classes[51:100]

#### Fit models using x.1
lambda <- msgl::lambda(x.1, classes.1, alpha = .5, d = 25, lambda.min = 0.075)
fit <- msgl::fit(x.1, classes.1, alpha = .5, lambda = lambda)

#### Training errors:

# Misclassification rate
Err(fit, x.1)

# Misclassification count
Err(fit, x.1, type = "count")

# Negative log likelihood error
Err(fit, x.1, type="loglike")

# Misclassification rate of x.2
Err(fit, x.2, classes.2)

#### Do cross validation
fit.cv <- msgl::cv(x.all, classes.all, alpha = .5, lambda = lambda)

#### Cross validation errors (estimated expected generalization error)

# Misclassification rate
Err(fit.cv)

# Negative log likelihood error
Err(fit.cv, type="loglike")

#### Do subsampling
test <- list(1:20, 21:40)
train <- lapply(test, function(s) (1:length(classes.all))[-s])

fit.sub <- msgl::subsampling(x.all, classes.all, alpha = .5,
 lambda = lambda, training = train, test = test)

# Mean misclassification error of the tests
Err(fit.sub)

# Negative log likelihood error
Err(fit.sub, type="loglike")

# }