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mutoss (version 0.1-13)

Unified Multiple Testing Procedures

Description

Designed to ease the application and comparison of multiple hypothesis testing procedures for FWER, gFWER, FDR and FDX. Methods are standardized and usable by the accompanying 'mutossGUI'.

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Install

install.packages('mutoss')

Monthly Downloads

3,884

Version

0.1-13

License

GPL

Issues

1

Pull Requests

0

Stars

4

Forks

0

Maintainer

Kornelius Rohmeyer

Last Published

March 14th, 2023

Functions in mutoss (0.1-13)

SUD

A general step-up-down procedure.
SU

A general step-up procedure.
aorc

Step-up-down test based on the asymptotically optimal rejection curve.
TSBKY_pi0_est

Two-step estimation method of Benjamini, Krieger and Yekutieli for estimating pi0
SD

A general step-down procedure.
adaptiveBH

Benjamini-Hochberg (2000) adaptive linear step-up procedure
adjPValuesPlot

A function plotting adjusted p-values...
SidakSD

Sidak-like (1987) step-down procedure
adaptiveSTS

Storey-Taylor-Siegmund (2004) adaptive step-up procedure
augmentation

Wrapper function to the augmentation methods of the multtest package.
gatherParameters

Extracts the parameters from the simulation()-Object
gao

Xin Gao's non-parametric multiple test procedure is applied to Data.
ftest.marginal

Marginal F test
fisher23_fast

Fisher-type (2x3) table association analysis for calculating one (marginal) p-value...
fisher22_fast

Fisher (2x2) table association analysis for calculating one (marginal) p-value...
fisher22.marginal

Fisher (2x2) table association analysis for calculating all marginal p-values...
fisher23.marginal

Fisher-type (2x3) table association analysis for calculating all marginal p-values...
compareMutoss

Functions for comparing outputs of different procedures.
calculateBetaAdjustment

Calculating the beta adjustment factor for the asymptotically optimal rejection curve.
bonferroni

Bonferroni correction...
gatherStatistics

Gathering statistics from simulation()-Object
hochberg

Hochberg (1988) step-up procedure
indepBR

Blanchard-Roquain (2009) 1-stage adaptive step-up
linearStepUp

Linear Step Up Service Function...
holm

Holm's (1979) step-down-procedure
hommel

Hommel's (1988) step-up-procedure
mu.test.class

Test for compatible classes for comparison...
nparcomp

Simultaneous confidence intervals for relative contrast effects...
notterman

Notterman data set
mu.test.name

Tests if all hypotheses have the same names.
mu.test.rates

Tests that different procedures used the same error rates.
mu.test.same.data

Tests if the same pvalues were used by different procedures.
mu.test.type

Tests that different procedures use the same error types.
multiple.down.adjust

A service function used by multiple...
jointCDF.orderedUnif

Joint cumulative distribution function of order statistics of n iid. U(0,1)-distributed random variables
mutoss.apply

Applies a function to a Mutoss object.
paired.marginal

Marginal paired two sample test
printRejected

Internal MuTossProjekt-Function
pval2qval

Strimmer et al.'s fdrtool-based q-values
mutoss.plotCI

mutoss.plotCI
mutoss.models

Mutoss Models
pval2locfdr

Strimmer et al.'s fdrtool-based local fdr
onesamp.marginal

Marginal one sample test
nparcomp.wrapper

Simultaneous confidence intervals for relative contrast effects...
ranktruncated

Rank truncated p-Value procedure...
regwq

REGWQ - Ryan / Einot and Gabriel / Welsch test procedure...
multiple.down

Benjamini-Krieger-Yekutieli (2006) Multi-Stage Step-Down
oracleBH

Bejamini-Hochberg (2000) oracle linear step-up Procedure...
multcomp.wrapper

Simultaneous confidence intervals for arbitrary parametric contrasts in unbalanced one-way layouts.
pValuesPlot

A function plotting p-values...
simulation

Simulation studies
snk

Student - Newman - Keuls rejective test procedure.
tukey.wrapper

Tukey HSD test and simultaneous confidence intervals for all pairs comparisons...
storey_pi0_est

Storey-Taylor-Siegmund estimation of pi0 (finite sample version)
twostageBR

Blanchard-Roquain (2009) 2-stage adaptive step-up...
two.stage

A p-value procedure which controls the FDR for independent test statistics.
twosamp.marginal

Marginal two sample test
reject

reject
requireLibrary

Tries to load a package.
sidak

Sidak correction
rom

Rom's (1990) step-up-procedure.
MutossMethod-class

Class MutossMethod
Qvalue

Storey's (2001) q-value Procedure...
BlaRoq

Blanchard-Roquain (2008) step-up Procedure for arbitrary dependent p-Values...
BY

Benjamini-Yekutieli (2001) step-up procedure
BL

Benjamini-Liu (1999) step-down procedure
BR_pi0_est

Estimate of pi0 using the one-step Blanchard-Roquain procedure
ABH_pi0_est

Lowest Slope Line (LSL) method of Hochberg and Benjamini for estimating pi0
BH

Benjamini-Hochberg (1995) linear step-up procedure
Mutoss-class

Class Mutoss
ErrorControl-class

Class ErrorControl