binInsert: Insert Locations

Description

Returns the number of ORF knockouts.

Usage

binInsert(insert,orf,returnCounts=FALSE,overlap=NULL,DEBUG=FALSE)

Arguments

insert

List of insertion locations

orf

2-column matrix of annotation

returnCounts

Return the number of insertions

overlap

Number of shared targets

DEBUG

Flag to debug the code

Value

Details

Finds the number of ORFs that have an insertion given a list of locations. If the returnCounts flag is true, the function returns the number of insertions per ORF. Uses the function hist for gains in speed.

References

See the book chapter O. Will (**) in **.

Examples

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