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occugene (version 1.32.0)

Functions for Multinomial Occupancy Distribution

Description

Statistical tools for building random mutagenesis libraries for prokaryotes. The package has functions for handling the occupancy distribution for a multinomial and for estimating the number of essential genes in random transposon mutagenesis libraries.

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Version

Version

1.32.0

License

GPL (>= 2)

Maintainer

Oliver Will

Last Published

February 15th, 2017

Functions in occugene (1.32.0)

Loads Annotation File

Insert Locations Quickly

Number of New Knockouts

Variance of the Occupancy Distribution

Insert Locations

Histogram Breakpoints

Parametric Fit for the Cumulative Occupancy Distribution

Parametric Function for the Cumulative Occupancy Distribution

Unbiased Estimator of the Number of Non-essential ORFs

sampleInsertions

Insertions for a Hypothetical Clonal Library

Unbiased Number of New Knockouts

Expected Value of the Occupancy Distribution

sampleAnnotation

Annotation for a Hypothetical Prokayote

Number of New ORF Knockouts

Checks the Format of Annotation and Insertions

Convert Occupancy Format to Negenes

Load Genome Annotation File