occugene (version 1.32.0)

binInsertHist: Insert Locations Quickly

Description

Given a list of locations, returns the number of ORFs hit.

Usage

binInsertHist(insert,orfHist,returnCounts=FALSE)

Arguments

insert

List of insertion locations

orfHist

Histogram breakpoints

returnCounts

Return the number of insertions

Value

Details

Finds the number of ORFs that have an insertion given a list of locations. If the returnCounts flag is true, the function returns the number of insertions per ORF. Uses the function hist for gains in speed.

References

See the book chapter O. Will (**) in **

See Also

binHist

Examples

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