occugene (version 1.32.0)

fFit: Parametric Fit for the Cumulative Occupancy Distribution

Description

Parameterizes the cumulative occupancy distribution.

Usage

fFit(anno,clone,TR=TRUE,b0=0,b1=0,b2=.0)

Arguments

anno

2-column matrix of annotation

clone

vector

TR

Report a trace

b0

Starting value b0

b1

Starting value b1

b2

Starting value b2

Value

Details

Fits various parametric functions to the occupancy distribution for a multinomial. Using the starting values of b0=0, b1=0, and b2=0 forces the function to find starting values for you.

References

See the book chapter O. Will (**) in **

Examples

data(sampleAnnotation)
data(sampleInsertions)
anno <- cbind(sampleAnnotation$first,sampleAnnotation$last)
clone <- sampleInsertions$position
TR <- TRUE
fm <- fFit(anno,clone,TR)