occugene (version 1.32.0)

occup2Negenes: Convert Occupancy Format to Negenes

Description

Convert the annotation and insertion formation of the occupancy package into the format for the negenes package.

Usage

occup2Negenes(anno,clone,INTERGENIC=FALSE)

Arguments

anno

2-column matrix of annotation

clone

vector of insertion locations

INTERGENIC

Process the intergenic region as last ORF.

Value

Details

Convert the annotation and insertion formation of the occupancy package into the format for the negenes package. Of the returned data frame, column 1 is n.sites, column 2, n.sites2, column 3, counts, column 4, counts2.

References

See the book chapter O. Will (**) in **

Examples

data(sampleAnnotation)
data(sampleInsertions)
anno <- cbind(sampleAnnotation$first,sampleAnnotation$last)
clone <- sampleInsertions$position
occup2Negenes(anno,clone)