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oce (version 1.7-2)

Analysis of Oceanographic Data

Description

Supports the analysis of Oceanographic data, including 'ADCP' measurements, measurements made with 'argo' floats, 'CTD' measurements, sectional data, sea-level time series, coastline and topographic data, etc. Provides specialized functions for calculating seawater properties such as potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state. Produces graphical displays that conform to the conventions of the Oceanographic literature. This package is discussed extensively by Kelley (2018) "Oceanographic Analysis with R" .

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Version

Install

install.packages('oce')

Monthly Downloads

3,613

Version

1.7-2

License

GPL (>= 2)

Maintainer

Last Published

March 22nd, 2022

Functions in oce (1.7-2)

ODFListFromHeader

Create a list of ODF header metadata
T90fromT68

Convert from IPTS-68 to ITS-90 temperature
T68fromT90

Convert from ITS-90 to IPTS-68 temperature
GMTOffsetFromTz

Determine time offset from timezone
T90fromT48

Convert from ITS-48 to ITS-90 temperature
ODFNames2oceNames

Translate ODF CODE strings to Oce Variable Names
abbreviateTimeLabels

Abbreviate a vector of times by removing commonalities
CTD_BCD2014666_008_1_DN.ODF.gz

Sample ctd dataset in odf format
ODF2oce

Create ODF object from the output of ODF::read_ODF().
ad2cpHeaderValue

Decode an item from a Nortek AD2CP file header
amsr-class

Class to Store AMSR-2 Satellite Data
adpFlagPastBoundary

Flag adp Data Past Water Column Boundary
adpEnsembleAverage

Ensemble Average an ADP Object in Time
argShow

Show an argument to a function, e.g. for debugging
as.ctd

Coerce data into CTD object
argo-class

Class to Store Argo Data
addSpine

Add a spine to a section object
applyMagneticDeclination

Earth magnetic declination
adp-class

Class to Store adp (ADCP) Data
approx3d

Trilinear interpolation in a 3D array
amsr

An amsr dataset for waters near Nova Scotia
as.echosounder

Coerce Data into an Echosounder Object
adp

Sample adp (acoustic-doppler profiler) dataset
adv

Sample adv (acoustic-doppler velocimeter) dataset
adv-class

Class to Store adv Data
adp_rdi.000

Sample adp (acoustic-doppler profiler) file in RDI format
argoJuldToTime

Convert Argo Julian Day (juld) to time
as.gps

Coerce data into a GPS dataset
as.ladp

Coerce data into an ladp object
adpConvertRawToNumeric

Convert Raw to Numeric Values For adp Objects
as.topo

Coerce Data into Topo Object
argoNames2oceNames

Convert Argo Data Name to Oce Name
as.met

Coerce Data into met Object
as.coastline

Coerce Data into a Coastline Object
as.cm

Coerce data into a CM object
as.rsk

Coerce Data Into a Rsk Object
airRho

Air density
angle2hms

Convert astronomical angle in degrees to hours, minutes and seconds
as.oce

Coerce Something Into an Oce Object
beamUnspreadAdp

Adjust ADP Signal for Spherical Spreading
bilinearInterp

Bilinear Interpolation Within a Grid
argo

ARGO float dataset
argoGrid

Grid Argo float data
as.unit

Convert a String to a Unit
binmapAdp

Bin-map an ADP object
binMean2D

Bin-average f=f(x,y)
coastlineCut

Cut a Coastline Object at Specified Longitude
coastlineWorld

World Coastline
as.xbt

Create an xbt object
as.windrose

Create a Windrose Object
as.sealevel

Coerce Data Into a Sealevel Object
ctd.cnv

Sample ctd dataset in .cnv format
binAverage

Bin-average a vector y, based on x values
ctd

A CTD profile in Halifax Harbour
binCount2D

Bin-count matrix data
binCount1D

Bin-count vector data
binMean1D

Bin-average f=f(x)
as.lisst

Coerce Data Into a LISST Object
bcdToInteger

Decode BCD to integer
as.lobo

Coerce Data into a Lobo Object
as.section

Create a Section
as.tidem

Create tidem object from fitted harmonic data
beamToXyzAdpAD2CP

Convert AD2CP-style adp data From Beam to XYZ Coordinates
beamToXyzAdv

Convert ADV from Beam to XYZ Coordinates
binApply2D

Apply a function to matrix data
byteToBinary

binApply1D

Apply a function to vector data
colormap

Calculate color map
colormapGMT

Create a GMT-type (CPT) colormap
composite,amsr-method

Create a composite of amsr satellite data
angleRemap

Convert angles from 0:360 to -180:180
as.adp

Create an ADP Object
coastline-class

Class to Store Coastline Data
coastlineBest

Find the Name of the Best Coastline Object
beamName

Get names of Acoustic-Doppler Beams
concatenate,adp-method

Concatenate adp objects
cm-class

Class to Store Current Meter Data
composite,list-method

Composite by Averaging Across Data
ctimeToSeconds

Interpret a character string as a time interval
curl

Curl of 2D vector field
dataLabel

Try to associate data names with units, for use by summary()
as.argo

Coerce Data Into an Argo Dataset
decimate

Smooth and Decimate, or Subsample, an Oce Object
coriolis

Coriolis parameter on rotating earth
ctd-class

Class to Store CTD (or general hydrographic) Data
beamToXyzAdp

Convert ADP From Beam to XYZ Coordinates
beamToXyz

Change ADV or ADP coordinate systems
concatenate,oce-method

Concatenate oce objects
bound125

Calculate a rounded bound, rounded up to mantissa 1, 2, or 5
bremen-class

Class to Store Bremen-formatted Data
d200321-001.ctd

Sample ctd dataset in .ctd format
ctdTrim

Trim Beginning and Ending of a CTD cast
cm

A Current Meter (cm) Object
d201211_0011.cnv

Sample ctd dataset in .cnv format
fillGap

Fill a gap in an oce object
findBottom

Find the Ocean Bottom in an Echosounder Object
geodGc

Great-circle Segments Between Points on Earth
ctdRaw

Seawater CTD Profile, Without Trimming of Extraneous Data
concatenate,list-method

Concatenate a list of oce objects
ctdRepair

Repair a malformed ctd object
detrend

Detrend a set of observations
download.amsr

Download and Cache an amsr File
drawPalette

Draw a palette, leaving margins suitable for accompanying plot
drawIsopycnals

Add Isopycnal Curves to TS Plot
computableWaterProperties

Available derived water properties
cnvName2oceName

Infer variable name, units and scale from a Seabird (.cnv) header line
composite

Create a composite object by averaging across good data
ctdDecimate

Decimate a CTD profile
gps-class

Class to Store GPS Data
equatorialToLocalHorizontal

Convert equatorial to local horizontal coordinate
geodXyInverse

Inverse Geodesic Calculation
errorbars

Draw error bars on an existing xy diagram
handleFlags,ctd-method

Handle Flags in ctd Objects
handleFlags,oce-method

Handle flags in oce objects
ctd_aml.csv

Sample ctd dataset in AML format
geodXy

Convert From Geographical to Geodesic Coordinates
handleFlags,section-method

Handle flags in Section Objects
handleFlags,vector-method

Signal erroneous application to non-oce objects
enuToOther

Rotate acoustic-Doppler data to a new coordinate system
concatenate

Concatenate oce objects
eclipticalToEquatorial

Convert ecliptical to equatorial coordinate
firstFinite

Get first finite value in a vector or array, or NULL if none
formatCI

Confidence interval in parenthetic notation
download.coastline

Download a coastline File
download.met

Download and Cache a met File
ctdFindProfiles

Find Profiles within a Tow-Yow CTD Record
defaultFlags

Suggest a default flag vector for bad or suspicious data
initializeFlagScheme,oce-method

Establish a data-quality scheme for a oce object
despike

Remove spikes from a time series
initializeFlags,adp-method

Create storage for a flag, and initialize values, for a adp object
lisst-class

Class to Store LISST Data
lisst

LISST Dataset
initializeFlags,oce-method

Create storage for a flag, and initialize values, for a oce object
g1sst-class

Class to Store G1SST Satellite-model Data
geodDist

Compute Geodesic Distance on Surface of Earth
initializeFlagScheme,section-method

Establish a data-quality scheme for a section object
landsat-class

Class to Store landsat Data
echosounder-class

Class to Store Echosounder Data
decodeHeaderNortek

Decode a Nortek Header
lonlat2map

Convert Longitude and Latitude to X and Y
download.topo

Download and Cache a topo File
decodeTime

Oce Version of as.POSIXct
drawDirectionField

Draw a Direction Field
fullFilename

Full name of file, including path
formatPosition

Format Geographical Position in Degrees and Minutes
handleFlagsInternal

Low-level function for handling data-quality flags
initializeFlagSchemeInternal

Establish a data-quality scheme for a oce object
handleFlags

Handle flags in oce objects
lonlat2utm

Convert Longitude and Latitude to UTM
initializeFlagScheme

Establish a data-quality scheme for a oce object
echosounder

Echosounder Dataset
landsat

Sample landsat Dataset
interpBarnes

Grid data using Barnes algorithm
is.ad2cp

Test whether object is an AD2CP type
imagep

Plot an Image with a Color Palette
landsatTrim

Trim a landsat Image to a Geographical Region
head.oce

Extract The Start of an Oce Object
integrateTrapezoid

Trapezoidal Integration
landsatAdd

Add a Band to a landsat Object
integerToAscii

Decode integer to corresponding ASCII code
latlonFormat

Format a latitude-longitude pair
lookWithin

Look Within the First Element of a List for Replacement Values
latFormat

Format a latitude
enuToOtherAdp

Convert ADP ENU to Rotated Coordinate
mapGrid

Add a Longitude and Latitude Grid to an Existing Map
oce.grid

Add a Grid to an Existing Oce Plot
mapScalebar

Add a Scalebar to a Map
oce.plot.ts

Oce Variant of plot.ts
lowpass

Perform lowpass digital filtering
mapText

Add Text to a Map
locationForGsw

Reform longitude and latitude for use in gsw computations.
julianCenturyAnomaly

Julian-Day number to Julian century
handleFlags,argo-method

Handle Flags in ARGO Objects
handleFlags,adp-method

Handle Flags in adp Objects
lon360

Alter longitudes from -180:180 to 0:360 convention
oce.axis.POSIXct

Oce Version of axis.POSIXct
mapImage

Add an Image to a Map
enuToOtherAdv

Convert ENU to Other Coordinate
oce.write.table

Write the Data Portion of Object to a File
oce.contour

Oce Variant of contour
julianDay

Convert a time to a Julian day
oceApprox

Interpolate 1D Data with UNESCO or Reiniger-Ross Algorithm
grad

Calculate Matrix Gradient
mapAxis

Add Axis Labels to an Existing Map
mapContour

Add Contours on a Existing map
lobo

Sample LOBO Dataset
mapArrows

Add Arrows to a Map
mapLongitudeLatitudeXY

Convert From Longitude and Latitude to X and Y
map2lonlat

Convert X and Y to Longitude and Latitude
lonFormat

Format a longitude
lobo-class

Class to Store LOBO Data
longitudeTighten

Try to Reduce Section Longitude Range
oceColorsSalinity

Create colors suitable for salinity fields
oceColorsTemperature

Create colors suitable for temperature fields
gravity

Acceleration due to earth gravity
initialize,ctd-method

Initialize storage for a ctd object
mapPoints

Add Points to a Map
mapPlot

Draw a Map
mapPolygon

Add a Polygon to a Map
matrixSmooth

Smooth a Matrix
matrixShiftLongitude

Rearrange areal matrix so Greenwich is near the centre
mapTissot

Add Tissot Indicatrices to a Map
oceAxis

Draw an axis, possibly with decade-style logarithmic scaling
oce

oce: A Package for Oceanographic Analysis.
oce.as.raw

Version of as.raw() that clips data
matchBytes

Locate byte sequences in a raw vector
mapCoordinateSystem

Draw a coordinate system
oceColorsViridis

Create colors similar to the matlab Viridis scheme
oceColorsOxygen

Create colors suitable for oxygen fields
oceCRS

Coordinate Reference System strings for some oceans
oceColorsTurbidity

Create colors suitable for turbidity fields
oceColorsTurbo

Create colors similar to the google turbo scheme
oceColorsGebco

Create colors in a Gebco-like scheme
oceColorsFreesurface

Create colors suitable for freesurface fields
oceColorsDensity

Create colors suitable for density fields
initializeFlagsInternal

Create storage for a flag, and initialize values, for a oce object
initializeFlags

Create storage for a flag, and initialize values, for a oce object
initializeFlagScheme,ctd-method

Establish a data-quality scheme for a ctd object
oceColorsJet

Create colors similar to the Matlab Jet scheme
mapDirectionField

Add a Direction Field to an Existing Map
moonAngle

Lunar Angle as Function of Space and Time
metNames2oceNames

Convert met Data Name to Oce Name
numberAsHMS

Convert a Numeric Time to Hour, Minute, and Second
oceColors9B

Create colors in a red-yellow-blue color scheme
numberAsPOSIXct

Convert a Numeric Time to a POSIXct Time
oceColorsPAR

Create colors suitable for PAR fields
oceGetData

Get Something from an oce data Slot
oceGetMetadata

Get Something From an oce metadata Slot
oceColorsCDOM

Create colors suitable for CDOM fields
oceColorsVorticity

Create colors suitable for vorticity fields
labelWithUnit

Create label with unit
oceDeleteData

Delete Something in an oce data Slot
oceDebug

Print a debugging message
oceConvolve

Convolve two time series
ladp-class

Class to Store Lowered-adp Data
oceSetData

Set Something in an oce data Slot
oceDeleteMetadata

Delete Something in an oce metadata Slot
makeFilter

Make a digital filter
magneticField

Earth magnetic declination, inclination, and intensity
mapLines

Add Lines to a Map
oceSetMetadata

Set Something in an oce metadata Slot
oceMagic

Find the Type of an Oceanographic Data File
oceRenameData

Rename Something in an oce data Slot
mapLocator

Locate Points on a Map
oceNames2whpNames

Translate Oce Data Names to WHP Data Names
plot,amsr-method

Plot an amsr Object
plot,argo-method

Plot an argo Object
odf-class

Class to Store ODF Data
parseLatLon

Parse a Latitude or Longitude String
plot,lisst-method

Plot a lisst Object
plot,lobo-method

Plot a lobo object
oceUnits2whpUnits

Translate oce unit to WHP unit
met

Sample met Object
met-class

Class to Store Meteorological Data
oceFilter

Filter a Time Series
oceEdit

Edit an Oce Object
ocePmatch

Partial matching of strings or numbers
plot,gps-method

Plot a gps Object
plot,echosounder-method

Plot an echosounder Object
plot,windrose-method

Plot a windrose Object
plotScan

Plot CTD data in a Low-Level Fashion
plot,topo-method

Plot a topo Object
plotSticks

Draw a Stick Plot
oceRenameMetadata

Rename Something in an oce metadata Slot
read.coastline.shapefile

Read a Coastline File in Shapefile Format
read.adp

Read an ADP File
read.coastline.openstreetmap

Read a Coastline File in Openstreetmap Format
read.adp.rdi

Read a Teledyne/RDI ADP File
read.adp.sontek

Read a Sontek ADP File
rangeLimit

Substitute NA for data outside a range
oceProject

Wrapper to sf::sf_project()
presentTime

Get the present time, in a stated timezone
oceSmooth

Smooth an Oce Object
resizableLabel

Provide axis names in adjustable sizes
read.ctd.sbe

Read a Seabird CTD File
rsk

Sample Rsk Dataset
rescale

Rescale values to lie in a given range
read.ctd.odv

Read an ODV-type CTD File
rsk-class

Class to Store Rsk Data
oceSpectrum

Wrapper to give normalized spectrum
ocecolors

Data that define some color palettes
plot,section-method

Plot a section Object
secondsToCtime

Time interval as colon-separated string
plot,tidem-method

Plot a tidem Object
predict.tidem

Predict a Tidal Signal
preferAdjusted

Set Preference for Adjusted Values
processingLogItem

Create an item that can be inserted into a processing log
read.adv

Read an ADV data file
read.adp.sontek.serial

Read a serial Sontek ADP file
read.amsr

Read an amsr File
processingLogShow

Show the processing log of an oce object
oce-class

Base Class for oce Objects
read.cm

Read a CM file
read.adv.nortek

Read an ADV data file
prettyPosition

Pretty lat/lon in deg, min, sec
read.adv.sontek.adr

Read an ADV data file
read.aquadopp

Read a Nortek Aquadopp File
read.coastline

Read a Coastline File
oce-deprecated

Deprecated and Defunct Elements of the oce package
read.ctd.itp

Read an ITP-type CTD File
read.ctd

Read a General CTD File
read.ctd.odf

Read a CTD file in ODF format
read.ctd.aml

Read an AML CTD file
oceColorsChlorophyll

Create colors suitable for chlorophyll fields
read.odf

Read an ODF file
read.xbt.noaa1

Read a NOAA format for AXBTs
read.rsk

Read a Rsk file
read.gps

Read a GPS File
read.index

Read a NOAA ocean index file
oceColorsClosure

Create color functions
plot,coastline-method

Plot a coastline Object
section-class

Class to Store Hydrographic Section Data
read.xbt

Read an xbt file
plot,ladp-method

Plot an ladp Object
renameData

Rename items in the data slot of an oce object (defunct)
oceColorsPalette

Create a vector of colors
satellite-class

Class to Store Satellite Data
read.xbt.edf

Read a Sippican '.edf' format xbt file
setFlags,ctd-method

Set data-quality flags within a ctd object
oceColorsPhase

Create colors suitable for phase fields
plot,met-method

Plot a met Object
plot,landsat-method

Plot a landsat Object
plot,oce-method

Plot an oce Object
rskToc

Decode table-of-contents File from a Rsk File
runlm

Calculate running linear models
sectionSort

Sort a Section
sealevel-class

Class to Store Sealevel Data
standardizeLongitude

Put longitude in the range from -180 to 180
oceColorsTwo

Create two-color palette
oceColorsVelocity

Create colors suitable for velocity fields
plotInset

Plot an Inset Diagram
processingLogAppend

Append an item to a processing log
plot,xbt-method

Plot an xbt Object
processingLog<-

Add an item to a processing log (in place)
[[,argo-method

Extract Something From an Argo Object
[[,adp-method

Extract Something from an adp Object
[[,bremen-method

Extract Something From a Bremen Object
[[<-,landsat-method

Replace Parts of a landsat Object
read.aquadoppHR

Read Nortek Aquadopp-HR File
read.aquadoppProfiler

Read a Nortek Aquadopp-Profiler File
setFlags,oce-method

Set data-quality flags within a oce object
plot,adp-method

Plot an adp Object
siderealTime

Convert a POSIXt time to a sidereal time
showMetadataItem

Show metadata item
setFlags,adp-method

Set data-quality flags within a adp object
plot,ctd-method

Plot a ctd Object
[[<-,lisst-method

Replace Parts of a LISST Object
[[<-,oce-method

Replace Parts of an Oce Object
[[<-,odf-method

Replace Parts of an ODF Object
subset,coastline-method

Subset a Coastline Object
[[,odf-method

Extract Something From an ODF Object
[[,echosounder-method

Extract Something from an Echosounder Object
[[,ctd-method

Extract Something From a ctd Object
[[,rsk-method

Extract Something From a Rsk Object
[[,oce-method

Extract Something From an oce Object
[[,met-method

Extract Something From a met Object
subtractBottomVelocity

Subtract Bottom Velocity from ADP
summary,met-method

Summarize a met Object
subset,ctd-method

Subset a ctd Object
summary,adp-method

Summarize an ADP Object
summary,lobo-method

Summarize a LOBO Object
[[<-,amsr-method

Replace Parts of an amsr Object
swAbsoluteSalinity

Seawater absolute salinity, in GSW formulation
[[<-,bremen-method

Replace Parts of a Bremen Object
swAlpha

Seawater thermal expansion coefficient
[[<-,cm-method

Replace Parts of a CM Object
[[<-,argo-method

Replace Parts of an Argo Object
[[<-,echosounder-method

Replace Parts of an Echosounder Object
[[<-,g1sst-method

Replace Parts of a G1SST Object
read.ctd.woce

Read a WOCE-exchange CTD File
read.ctd.woce.other

Read a WOCE-exchange EXPOCODE File
swDepth

Water depth
swDynamicHeight

Dynamic height of seawater profile
read.lobo

Read a LOBO File
swSoundAbsorption

Seawater sound absorption in dB/m
[[<-,section-method

Replace Parts of a Section Object
[[<-,tidem-method

Replace Parts of a Tidem Object
summary,amsr-method

Summarize an amsr Object
summary,ctd-method

Summarize a ctd Object
summary,adv-method

Summarize an ADV object
retime

Adjust the time within Oce object
sectionGrid

Grid a Section in Pressure Space
read.met

Read a met File
rotateAboutZ

Rotate velocity components within an oce object
sectionSmooth

Smooth a Section
plot,satellite-method

Plot a satellite Object
[[<-,rsk-method

Replace Parts of a Rsk Object
summary,echosounder-method

Summarize an Echosounder Object
[[,adv-method

Extract Something from an adv Object
[[,amsr-method

Extract Something From an amsr Object
plot,adv-method

Plot an adv Object
plot,bremen-method

Plot a bremen Object
[[<-,sealevel-method

Replace Parts of a Sealevel Object
[[,sealevel-method

Extract Something From a Sealevel Object
swSoundSpeed

Seawater sound speed
summary,topo-method

Summarize A Topo Object
summary,tidem-method

Summarize a Tidem Object
swCSTp

Electrical conductivity ratio from salinity, temperature and pressure
swConservativeTemperature

Seawater conservative temperature, in GSW formulation
plotTS

Plot Temperature-Salinity Diagram
read.adv.sontek.text

Read an ADV data file
plotTaylor

Plot a Model-data Comparison Diagram
read.adv.sontek.serial

Read an ADV data file
plot,sealevel-method

Plot a sealevel Object
read.argo

Read an Argo Data File
read.bremen

Read a Bremen File
read.g1sst

Read a G1SST file
read.echosounder

Read an Echosounder File
plot,cm-method

Plot a cm Object
plot,odf-method

Plot an odf Object
swTSrho

Seawater temperature from salinity and density
unduplicateNames

Rename duplicated character strings
swThermalConductivity

Seawater thermal conductivity
[[,section-method

Extract Something From a Section Object
[[<-,adp-method

Replace Parts of an ADP Object
read.netcdf

Read a NetCDF File
[[<-,adv-method

Replace Parts of an ADV Object
read.oce

Read an Oceanographic Data File
[[<-,coastline-method

Replace Parts of a Coastline Object
plot,rsk-method

Plot a rsk Object
[[<-,ctd-method

Replace Parts of a ctd Object
subset,lobo-method

Subset a LOBO Object
subset,echosounder-method

Subset an Echosounder Object
subset,odf-method

Subset an ODF object
read.sealevel

Read a Sealevel File
read.section

Read a Section File
sealevel

Sealevel data for Halifax Harbour
sealevelTuktoyaktuk

Sea-level data set acquired in 1975 at Tuktoyaktuk
setFlags

Set data-quality flags within a oce object
plotPolar

Draw a Polar Plot
subset,met-method

Subset a met Object
subset,rsk-method

Subset a Rsk Object
plotProfile

Plot a CTD Profile
swSigmaT

Seawater quasi-potential density anomaly
summary,landsat-method

Summarize a landsat Object
summary,lisst-method

Summarize a LISST Object
ungrid

Extract (x, y, z) from (x, y, grid)
summary,sealevel-method

Summarize a Sealevel Object
pwelch

Welch periodogram
summary,section-method

Summarize a Section Object
shiftLongitude

Shift Longitude to Range -180 to 180
rangeExtended

Calculate Range, Extended a Little, as is Done for Axes
[[,cm-method

Extract Something From a cm Object
[[,coastline-method

Extract Something From a Coastline Object
swAlphaOverBeta

Ratio of seawater thermal expansion coefficient to haline contraction coefficient
swPressure

Water pressure
swBeta

Seawater haline contraction coefficient
swRho

Seawater density
subset,oce-method

Subset an oce Object
summary,gps-method

Summarize a GPS Object
summary,ladp-method

Summarize an ladp object
swSigmaTheta

Seawater potential density anomaly
read.adp.nortek

Read a Nortek ADP File
read.landsat

Read a landsat File Directory
read.adp.ad2cp

Read an AD2CP File
swSigma

Seawater density anomaly
swSigma0

Seawater potential density anomaly referenced to surface pressure
summary,oce-method

Summarize an oce Object
[[,lisst-method

Extract Something From a LISST Object
swSstar

Seawater Preformed Salinity, in GSW formulation
tidalCurrent

Tidal Current Dataset
tidedata

Tidal Constituent Information
read.topo

Read a Topo File
read.woa

Read a World Ocean Atlas NetCDF File
read.lisst

Read a LISST File
[[,lobo-method

Extract Something From a LOBO Object
[[,tidem-method

Extract Something From a tidem Object
rsk2ctd

Create a ctd Object from an rsk Object
tidem-class

Class to Store Tidal Models
titleCase

Capitalize first letter of each of a vector of words
swTFreeze

Seawater freezing temperature
tidem

Fit a Tidal Model to a Timeseries
[[,topo-method

Extract Something From a Topo Object
[[<-,met-method

Replace Parts of a met Object
[[<-,lobo-method

Replace Parts of a LOBO Object
subset,adp-method

Subset an ADP Object
[[<-,xbt-method

Replace Parts of an xbt Object
toEnu

Rotate acoustic-Doppler data to the enu coordinate system
toEnuAdp

Convert an ADP Object to ENU Coordinates
swSR

Seawater Reference Salinity, in GSW formulation
summary,odf-method

Summarize an ODF Object
swSTrho

Seawater salinity from temperature and density
toEnuAdv

Convert an ADV Object to ENU Coordinates
subset,argo-method

Subset an Argo Object
vectorShow

Show some values from a list, vector or matrix
unwrapAngle

Unwrap an angle that suffers modulo-360 problems
useHeading

Replace the Heading for One Instrument With That of Another
unabbreviateYear

Determine year from various abbreviations
section

Hydrographic section
undriftTime

Correct for drift in instrument clock
rskPatm

Estimate Atmospheric Pressure in Rsk Object
write.ctd

Write a CTD Data Object as a CSV File
subset,cm-method

Subset a CM Object
sectionAddStation

Add a CTD Station to a Section
subset,sealevel-method

Subset a Sealevel Object
summary,bremen-method

Summarize a Bremen Object
subset,section-method

Subset a Section Object
summary,argo-method

Summarize an Argo Object
xbt

An XBT Object
xbt-class

Class to Store XBT Data
summary,xbt-method

Summarize an xbt Object
summary,windrose-method

Summarize a windrose object
swRrho

Density ratio
swSCTp

Practical salinity from electrical conductivity, temperature and pressure
velocityStatistics

Report Statistics of adp or adv Velocities
snakeToCamel

Convert each of a vector of strings from SNAKE_CASE to camelCase
xbt.edf

Sample xbt dataset
[[,gps-method

Extract Something From a GPS Object
[[,ladp-method

Extract Something From an ladp Object
standardDepths

Standard Oceanographic Depths
[[,g1sst-method

Extract Something From a G1SST Object
swZ

Vertical coordinate
tail.oce

Extract the End of an Oce Object
[[,landsat-method

Extract Something From a landsat Object
[[,windrose-method

Extract Something From a Windrose Object
swSigma1

Seawater potential density anomaly referenced to 1000db pressure
[[<-,gps-method

Replace Parts of a GPS Object
[[,xbt-method

Extract Something From an xbt Object
swSigma2

Seawater potential density anomaly referenced to 2000db pressure
[[<-,ladp-method

title Replace Parts of a ladp Object
test_met_xml2.xml

Sample met dataset (XML format as of October 2019)
swSpecificHeat

Seawater specific heat
threenum

Calculate min, mean, and max values
topoWorld

Global Topographic Dataset at Half-degree Resolution
window.oce

Window an Oce Object by Time or Distance
trimString

Remove leading and trailing whitespace from strings
xyzToEnu

Convert Acoustic-Doppler Data From xyz to enu Coordinates
xyzToEnuAdp

Convert ADP From XYZ to ENU Coordinates
windrose-class

Class to Store Windrose Data
[[<-,windrose-method

Replace Parts of a Windrose Object
[[<-,topo-method

Replace Parts of a Topo Object
swSpice

Seawater spiciness
subset,adv-method

Subset an ADV Object
subset,xbt-method

Subset an xbt Object
summary,coastline-method

Summarize a Coastline Object
subset,topo-method

Subset a Topo Object
summary,cm-method

Summarize a CM Object
subset,amsr-method

Subset an amsr Object
summary,rsk-method

Summarize a Rsk Object
summary,satellite-method

Summarize a satellite object
tidemAstron

Astronomical Calculations for Tidem
tidemConstituentNameFix

Change tidal constituent name from T-TIDE to Foreman convention
swLapseRate

Seawater lapse rate
sunAngle

Solar Angle as Function of Space and Time
sunDeclinationRightAscension

Sun Declination and Right Ascension
swN2

Squared buoyancy frequency for seawater
tidemVuf

Nodal Modulation Calculations for Tidem
swSigma3

Seawater potential density anomaly referenced to 3000db pressure
unitFromString

Decode units, from strings
woceNames2oceNames

Translate WOCE Data Names to Oce Data Names
unitFromStringRsk

Infer Rsk units from a vector of strings
timeToArgoJuld

Convert time to Argo Julian Day (juld)
woceUnit2oceUnit

Translate WOCE units to oce units
swSigma4

Seawater potential density anomaly referenced to 4000db pressure
swViscosity

Seawater viscosity
swTheta

Seawater potential temperature
test_met_csv1.csv

Sample met dataset (CSV format prior to October 2019)
test_met_csv2.csv

Sample met dataset (CSV format as of October 2019)
topoInterpolate

Interpolate Within a Topo Object
usrLonLat

Calculate lon-lat coordinates of plot-box trace
topo-class

Class to Store Topographic Data
utm2lonlat

Convert UTM to Longitude and Latitude
wind

Wind dataset
webtide

Get a Tidal Prediction from a WebTide Database
xyzToEnuAdpAD2CP

Convert ADP2CP adp object From XYZ to ENU Coordinates
xyzToEnuAdv

Convert an ADP from XYZ to ENU Coordinates