oligo (version 1.36.1)

checkOrder: Checks whether a eSet-derived class is ordered by chromosome and physical position

Description

Checks whether a eSet-derived class (e.g., a SnpSet or CNSet object) is ordered by chromosome and physical position

Usage

checkOrder(object, verbose = FALSE)
chromosomePositionOrder(object, ...)

Arguments

object

A SnpSet or CopyNumberSet.

verbose

Logical.

...

additional arguments to order

Value

• Logical

Details

Checks whether the object is ordered by chromosome and physical position.

See Also

order

Examples

data(oligoSetExample)
if(!checkOrder(oligoSet)){
   oligoSet <- chromosomePositionOrder(oligoSet)
}
checkOrder(oligoSet)