omicade4 (version 1.12.0)

omicade4-package: multiple co-inertia analysis of omics datasets

Description

The main function in the package performing multiple co-inertia analysis on omics datasets

Details

Package:

omicade4

Type:

Package

Version:

1.7.2

Date:

2015-04-06

License:

GPL-2

LazyLoad:

yes

Multiple co-inertia analysis (MCIA) is a multivariate analysis method that could be used to analyze multiple tables measuring the same set of individuals, this package provides a one-stop function for MCIA and functions for subsequent analysis especially for multiple omics datasets.

References

Meng C, Kuster B, Culhane AC and Gholami AM. A multivariate approach to the integration of multi-omics datasets. (Manuscript under preparation)

Culhane AC, Thioulouse J, Perriere G, Higgins DG. (2005) MADE4: an R package for multivariate analysis of gene expression data.Bioinformatics. 21(11):2789-90. S. Dray and A.B. Dufour. (2007) The ade4 package: implementing the duality diagram for ecologists. Journal of Statistical Software 22(4):1-20.

See Also

ade4 and package made4

Examples

  data(NCI60_4arrays)
  mcoin <- mcia(NCI60_4arrays)