import_qiime_sample_data

(Required). A character string or connection.
That is, any suitable <code>file</code> argument to the <code><a href="/link/read.table?package=phyloseq&version=1.16.2" rd-options="" data-mini-rdoc="phyloseq::read.table">read.table</a></code> function. 
The name of the QIIME map
file required for processing pyrosequencing tags
in QIIME as well as some of the post-clustering analysis. This is a required
input file for running QIIME. Its strict formatting specification is expected by
this function, do not attempt to modify it manually once it has worked properly
in QIIME.

mapfilename

QIIME produces several files that can be analyzed in the phyloseq-package, 
This includes the map-file, which is an important <em>input</em>
to QIIME that can also indicate sample covariates. It is converted naturally to the 
sample_data component data type in phyloseq-package, based on the R data.frame.

phyloseq provides a set of classes and tools
    to facilitate the import, storage, analysis, and
    graphical display of microbiome census data.

Paul McMurdie

phyloseq

Handling and analysis of high-throughput microbiome
    census data

import_qiime_sample_data function

(Required). A character string or connection.
That is, any suitable <code>file</code> argument to the <code><a href="read.table" rd-options="">read.table</a></code> function. 
The name of the QIIME map
file required for processing pyrosequencing tags
in QIIME as well as some of the post-clustering analysis. This is a required
input file for running QIIME. Its strict formatting specification is expected by
this function, do not attempt to modify it manually once it has worked properly
in QIIME.

import_qiime_sample_data: Import just `sample_data` file from QIIME pipeline.

Description

Usage

Arguments

Value

Details

See Also

Examples