Learn R Programming

piano (version 1.12.0)

Platform for integrative analysis of omics data

Description

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

Copy Link

Version

Version

1.12.0

License

GPL (>=2)

Maintainer

Leif Varemo

Last Published

February 15th, 2017

Functions in piano (1.12.0)

consensusScores

Top consensus gene sets and boxplot
extractFactors

Extracts ArrayData factors
runQC

Run quality control
loadMAdata

Load and preprocess microarray data
runGSA

Gene set analysis
GSAsummaryTable

Gene set analysis summary table
runGSAhyper

Gene set analysis with Fisher's exact test
diffExp

Perform differential expression analysis
gsa_results

Gene set analysis result data
writeFilesForKiwi

Write files for Kiwi
loadGSC

Load a gene set collection
geneSetSummary

Gene set summary
piano-package

Piano - Platform for Integrative ANalysis of Omics data
gsa_input

Random input data for gene set analysis
GSAheatmap

Heatmap of top significant gene sets
consensusHeatmap

Heatmap of top consensus gene sets
polarPlot

Polar plot
networkPlot

Gene set network plot