gsa_input


       This data set is completely randomly generated and contains p-values for 2000 genes, fold-changes for those genes and a gene set collection giving the connection between genes and 50 gene sets. Only attended to be used as example data for <code><a rd-options="" href="/link/runGSA?package=piano&version=1.12.0" data-mini-rdoc="piano::runGSA">runGSA</a></code>.
     

datasets

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

Leif Varemo

piano

Platform for integrative analysis of omics data

gsa_input function

A list containing 3 elements: gsa_input$pvals and gsa_input$directions are numeric vectors, gsa_input$gsc is a two-column matrix with gene names in the first column and gene set names in the second.

Format

This data set is completely randomly generated and contains p-values for 2000 genes, fold-changes for those genes and a gene set collection giving the connection between genes and 50 gene sets. Only attended to be used as example data for <code><a href="runGSA" rd-options="">runGSA</a></code>.

gsa_input: Random input data for gene set analysis

Description

Usage

Arguments

Format