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rareGE (version 0.1)

Testing Gene-Environment Interaction for Rare Genetic Variants

Description

Tests gene-environment interaction for rare genetic variants using Sequence Kernel Association Test (SKAT) type gene-based tests. Includes two tests for the interaction term only, and one joint test for genetic main effects and gene-environment interaction.

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Version

Install

install.packages('rareGE')

Monthly Downloads

11

Version

0.1

License

GPL-3

Maintainer

Han Chen

Last Published

July 30th, 2014

Functions in rareGE (0.1)

rareGEgeno

Example genotype data
INT_FIX

Gene-environment interaction test treating genetic main effects as fixed
rareGE-package

Testing Gene-Environment Interaction for Rare Genetic Variants
wuweights

Wu weight function
rareGEpheno

Example phenotype data
INT_RAN

Gene-environment interaction test treating genetic main effects as random
rareGE

Tests for gene-environment interaction and joint test of genetic main effects and gene-environment interaction
JOINT

Joint test of genetic main effects and gene-environment interactions