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rbamtools (version 2.4.0)

Reading, manipulation and writing BAM (Binary alignment) files.

Description

This package provides an interface to functions of the 'SAMtools' C-Library by Heng Li.

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Version

Install

install.packages('rbamtools')

Monthly Downloads

232

Version

2.4.0

License

Artistic-2.0

Maintainer

Wolfgang Kaisers

Last Published

March 27th, 2013

Functions in rbamtools (2.4.0)

headerReadGroup-class

Class "headerReadGroup"
bamReader-class

Class "bamReader"
headerProgram-class

Class "headerProgram"
bamRange-class

Class "bamRange"
bamRange

bamRange(bamReader, coordinates,complex=FALSE)
gapSiteList-class

Class "gapSiteList"
getNextAlign-methods

getNextAlign: Retrieving next align from bamReader or bamRange
bamWriter-class

Class "bamWriter"
headerLine-class

Class "headerLine"
bamClose-methods

bamClose(bamReader), bamClose(bamWriter)
bamHeaderText-class

Class "bamHeader"
bamAlign-class

Class "bamAlign"
readPooledBamGapDf

readPooledBamGapDf
refSeqDict-class

Class "refSeqDict"
filename-methods

Reading filename from bamReader or bamWriter
rbamtools-package

Reading, writing and manipulating BAM-file format.
bamGapList-class

Class "bamGapList"
bamHeader-class

Class "bamHeader"
gapList-class

Class "gapList"
setVal

setVal(object,members,values)
bamWriter

bamWriter Object
readPooledBamGaps

readPooledBamGaps
getHeaderText-methods

getHeaderText Assembling member data into Header-Text
isOpen-methods

isOpen(bamReader),isOpen(bamWriter)
getVal

getVal(object,members)
as.data.frame-methods

Conversion of bamRange or gapList into a data.frame
bamReader

bamReader