rbamtools (version 2.4.0)

headerProgram-class: Class "headerProgram"

Description

headerProgram represents Data contained in the header Section of BAM-files.

Objects from the Class

Objects can be created by calls of the form hl<-new("headerProgram").

References

The SAM Format Specification (v1.4-r985). The SAM Format Specification Working Group. September 7, 2011. http://www.samtools.sourceforge.net/SAM1.pdf

Examples

bam <- system.file("extdata", "accepted_hits.bam", package="rbamtools")
reader<-bamReader(bam)
isOpen(reader)
header<-getHeader(reader)
htxt<-getHeaderText(header)
headProg<-headerProgram(htxt)
getVal(headProg,"PN")
setVal(headProg,"PN","bwa")
l<-as.list(headProg)
ht<-getHeaderText(headProg)
bamClose(reader)