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rnaseqcomp (version 1.0.0)

Benchmark for RNA-seq Quantification Pipelines

Description

Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-replicate quantifications for genes, transcripts, junctions or exons by each pipeline with nessasery meta information should be organizd into numeric matrix in order to proceed the evaluation.

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Version

Version

1.0.0

License

GPL-3

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Maintainer

Mingxiang Teng

Last Published

February 15th, 2017

Functions in rnaseqcomp (1.0.0)

check_rnaseqcomp

Sanity Check of S4 rnaseqcomp class
encodeCells

Two Cell Lines from ENCODE by 9 Methods
plotMAD

Plots of Median Absolute Deviation
plotNE

Plots of Express And Non-express Features
matrixFilter

Quantification Table Filtering
plotCAT

CAT Plots of Differential Express Features
rnaseqcomp-class

rnaseqcomp