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s4vd (version 1.1-1)

jaccardmat: jaccard matrix

Description

The function calculates the pairwise jaccard coefficients between the biclusters of two biclustering results

Usage

jaccardmat(res1,res2)

Arguments

res1
A biclustering result as an object of class Biclust
res2
A biclustering result as an object of class Biclust

Details

The result is matrix of pairwise jaccard coefficents between the biclusters of res1 and res2.

See Also

jaccardind

Examples

Run this code

#lung cancer data set   Bhattacharjee et al. 2001
data(lung200)
set.seed(12)
res1 <- biclust(lung200,method=BCs4vd(),pcerv=.5,pceru=0.01,ss.thr=c(0.6,0.65)
,start.iter=3,size=0.632,cols.nc=TRUE,steps=100,pointwise=TRUE
,merr=0.0001,iter=100,nbiclust=10,col.overlap=FALSE)
res2 <- biclust(lung200,method=BCPlaid())
jaccardmat(res1,res2)

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