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simboot

Corresponding publications

The simultaneous confidence intervals for Shannon's and Simpson's indices are described and compared in the SCfDI paper.
The comparison of two or more groups of observations, while simultaneously testing a user-defined selection of a number of 'true' diversity measures is published in the Hill paper.

Other resources

The simboot project also has a corresponding homepage which can by found at the simboot home page.

To post feature requests or ask for help, try the simboot Issue Tracker.

Development

To install the development version of the simboot package, it is easiest to use the devtools package:

install.packages("devtools")  # if needed..
devtools::install_github("shearer/simboot")
library(simboot)

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Install

install.packages('simboot')

Monthly Downloads

187

Version

0.2-8

License

GPL (>= 2)

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Last Published

February 9th, 2024

Functions in simboot (0.2-8)

estSimpsonf

Estimator for Simpson's index odered by a factorial variable f.
simboot-package

Simultaneous inference for diversity indices.
rpht

Internal function for simultaneous bayesian bootstrap intervals
tsht

Internal function for simultaenous bootstrap intervals
waldci

Internal function for Wald intervals
CCdrp

Internal function
SCIrp

Internal function
Bacteria

Relative Abundances of Soil Bacteria
Simpson

Internal function for Simpson estimator
predatGM

Abundance data of predatory insects
Boutrp

Internal function
WYht

Internal function for simultaneous bootstrap confidence intervals
sbdiv

Perform simultaneous confidence intervals or adjusted p--values for the Shannon and the Simpson index.
corrmatgen

Internal function.
saproDipGM

Abundance data of Diptera with saprophagous larvae
estShannon

Estimator for Shannon's index
contrMat

Contrast Matrices
estShannonWY

Estimator for Shannon's index row wise.
estShannonf

Estimator for Shannon's index odered by a factorial variable f.
asht

Internal function for simultaneous asymptotic intervals
estThetaRow

Internal function
mcpHill

Multiplicity-adjusted p-values for comparing biodiversity via simultaneous inference of a user-defined selection of diversity indices
estSimpson

Estimator for Simpson's index