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staRank (version 1.14.0)

Stability Ranking

Description

Detecting all relevant variables from a data set is challenging, especially when only few samples are available and data is noisy. Stability ranking provides improved variable rankings of increased robustness using resampling or subsampling.

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Version

Version

1.14.0

License

GPL

Maintainer

Juliane Siebourg

Last Published

February 15th, 2017

Functions in staRank (1.14.0)

mwTest2samp

mwTest2samp
stabRank

Get stability ranking
Pi

Get Pi
staRank-package

Stability ranking
getRankmatrix

getRankmatrix
getSampleScores

Get Sample Scores
salmonellaStability

Example stability analysis on a subset of the Salmonella infection dataset
aggregRank

aggregRank
show

Show function for a RankSummary object.
avrgRank

Get average ranking
salmonellaInfection

RNAi screen of human cells during Salmonella infection
summaryStats

Summary statistic per element
summary

Summary method for RankSummary object
runRSA

runRSA
getStability

getStability
rankCor

Get rank correlations
method

Get method
uniqueRSARanking

uniqueRSARanking
RankSummary-class

Class RankSummary
baseRank

Get base ranking
stableSetSize

Get stable set sizes
stabilityRanking

Wrapper to perform stabilityRanking
dataFormatRSA

dataFormatRSA