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strvalidator (version 0.3.0)

Internal validation of forensic STR kits made easy with strvalidator.

Description

strvalidator provide tools that make it easier to perform an internal validation of a forensic short tandem repeat (STR) kit for human identification. The tools are developed to provide all necessary data to conform with the ENFSI guidelines for internal validation. More information about each function can be found in the respective help documentation.

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Version

Install

install.packages('strvalidator')

Monthly Downloads

368

Version

0.3.0

License

GPL-2

Issues

2

Pull Requests

0

Stars

6

Forks

3

Maintainer

Oskar Hansson

Last Published

August 12th, 2013

Functions in strvalidator (0.3.0)

addDye_gui

Adds dye information
calculateDropout

Calculate drop-out events
calculateBalance_gui

Calculate Balance
checkSubset_gui

Check subsetting of a dataset
checkSubset

check subset
dyeToColor

Convert dye letter to color name.
cropData_gui

Crop or replace GUI
editData_gui

Edit or view data frames GUI
export

Export
guessProfile_gui

Guess profile
combineRef

Combine reference samples
ref1

ESX17 Positive Control Profile
ref2

ESX17 example data
slim_gui

Slim data frames
sortMarkers

Sort markers
set2

ESX17 example data
slim

Slim data frames
ref11

ESX17 Positive Control Profile
calculateH_gui

Calculate H GUI
calculateBalance

Calculate balance
calculateHeterozygous_gui

Calculate Heterozygous GUI
calculateHeterozygous

Calculate heterozygous loci
colNames

colNames
countPeaks

Calculate summary
filterProfile_gui

Filter Profile GUI
import

Import GeneMapper.
import_gui

Import from text file
set1

Typing data in 'GeneMapper' format
export_gui

Export objects
modelDropout

model drop-out events
guessProfile

Guess Profile
ref4

ESX17 example data for dropout analysis.
getKit

Get kit
getDropoutData

Get drop-out events
addKitInfo

Adds all kit information
addData_gui

Add data GUI
calculateH

Calculate average peak height.
calculateMean

Calculate mean
calculateDropout_gui

Calculate Dropout GUI
addData

Adds new data columns to a data frame
filterProfile

Filter out profiles from DNA results
calculateMx

Calculate Mx
ref3

ESX17 example data for dropout analysis.
strValidator-package

Simplifies internal validation of forensic STR typing kits
modelDropout_gui

model and plot drop-out events
calculateStutter

Calculate stutter
plotBalance_gui

Plot Balance GUI
calculateStutter_gui

Calculate Stutters
calculateSummary

Calculate summary
saveObject

Save object
calculateResultType

Calculate result type
tableStutter_gui

Guess profile
plotDropout_gui

Plot Dropout GUI
strvalidator

GUI for STR Validator
detectKit

Detect kit
trim_gui

Trim data GUI
listObjects

List objects
concatenate_gui

Concatenate two datasets
addDye

Adds dye information to a data frame
set4

ESX17 example data for dropout analysis.
plotStutter_gui

Plot Stutter GUI
trim

Trim data
tableStutter

Table stutter
set3

ESX17 example data for dropout analysis.