Usage
calculateStutter(data, ref, back = 2, forward = 1,
interference = 0, replaceVal = NULL, byVal = NULL,
debug = FALSE)Arguments
data
data frame with genotype data in 'slim'
format. Requires columns 'Sample.Name', 'Marker',
'Allele', 'Height'.
ref
data frame in 'slim' format with the known
profiles. Requires columns 'Sample.Name', 'Marker',
'Allele'.
back
integer for the maximal number of backward
stutters (max size difference 2 = n-2 repeats).
forward
integer for the maximal number of forward
stutters (max size difference 1 = n+1 repeats).
interference
integer specifying accepted level of
interference between peaks. 0 = no overlap between
stutters and alleles is allowed. 1 = stutter-stutter
interference is allowed. 2 = stutter-allele interference
is allowed.
replaceVal
numeric vector with 'false' stutters to
replace.
byVal
numeric vector with correct stutters.
debug
logical indicating printing debug
information.