zFactor

the negative control used in the WELL_CONTENT_NAME.

negativeCon

the positive control used in the WELL_CONTENT_NAME.

positiveCon

use mean to calcualate z factor and z' factor by default; otherwise use median.

useMean

calcualte the Z and Z' factor for each plate.

Select hits from synthetic lethal RNAi screen data. For
        example, there are two identical celllines except one gene is
        knocked-down in one cellline. The interest is to find genes
        that lead to stronger lethal effect when they are knocked-down
        further by siRNA. Quality control and various visualisation
        tools are implemented. Four different algorithms could be used
        to pick up the interesting hits. This package is designed based
        on 384 wells plates, but may apply to other platforms with
        proper configuration.

zFactor: Calcualte the Z and Z' factor

Description

Usage

Arguments

Value

References

Examples