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zooimage (version 5.5.2)

Analysis of Numerical Plankton Images

Description

A free (open source) solution for analyzing digital images of plankton. In combination with ImageJ, a free image analysis system, it processes digital images, measures individuals, trains for automatic classification of taxa, and finally, measures plankton samples (abundances, total and partial size spectra or biomasses, etc.).

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Version

Install

install.packages('zooimage')

Monthly Downloads

118

Version

5.5.2

License

GPL (>= 2)

Maintainer

Philippe Grosjean

Last Published

June 29th, 2018

Functions in zooimage (5.5.2)

gui-utilities

Various GUI utility functions used by ZooImage
ZIClass

Create and manipulate 'ZIClass' objects
file-utilities

Various file utility functions used by ZooImage
import

Function to import data from the FlowCAM
ZITrain

Manipulate training and testsets 'ZITrain'/'ZITest' objects
ZIRes

Various function to calculate results ('ZIRes' object)
correctError

The ZooImage error correction (manual validation) tools
utilities

Various utility functions used by ZooImage
gui

The ZooImage GUI (Graphical User Interface)
zie

ZIE (ZooImage Extension) manipulate .zie files to add custom import, export, etc. routines to ZooImage
zic

Check .zic files (ZooImage Categories)
zid

Manage .zid files (ZooImage Data)
zidb

Manage .zidb files (ZooImage Databases)
zim

Manipulate .zim files (ZooImage Metadata/Measurements)
zooimage-package

ZooImage: analysis of digital plankton images
zip

Zip and unzip raw .tif images for ZooImage and embed metadata
zis

Manipulate .zis files (ZooImage Samples description)