destiny (version 2.0.4)

extractions: Extraction methods

Description

Extraction methods

Usage

# S4 method for DiffusionMap
names(x)
# S4 method for DPT
names(x)
# S4 method for DiffusionMap,character,missing
[[(x, i, j, ...)
# S4 method for DPT,character,missing
[[(x, i, j, ...)
# S4 method for DPT,index,index
[[(x, i, j, ...)
# S4 method for DiffusionMap
$(x, name)
# S4 method for DPT
$(x, name)

Arguments

x

DiffusionMap or DPT object

i, name

Name of a diffusion component 'DCx', 'DPTx', 'Branch' or column from the data

j

N/A

...

ignored

Value

The names or data row, see respective generics.

See Also

Extract, names for the generics. DiffusionMap accessors, DiffusionMap methods, coercions for more methods

Examples

data(guo)
dm <- DiffusionMap(guo)
dm$DC1        # A diffusion component
dm$Actb       # A gene expression vector
dm$num_cells  # Phenotype metadata

dpt <- DPT(dm)
dm$Branch
dm$DPT1