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Version

Version

3.10.1

License

Artistic-2.0

Maintainer

Greg Finak

Last Published

February 15th, 2017

Functions in flowClust (3.10.1)

box

Box-Cox Transformation
density,flowClust-method

Grid of Density Values for the Fitted t Mixture Model with Box-Cox Transformation
mkPrior-methods

Generate FlowClust prior Specifications
split,flowClust-method

Splitting Data Based on Clustering Results
mkPrior

Generate a flowClust prior specification
SimulateMixture

Random Generation from a t Mixture Model with Box-Cox Transformation
flowClust2Prior

Generate a prior specification based on a flowClust model This function generates a prior specification based on a flowClust fit object It can be passed to a second round of flowClust() with usePrior="yes" The prior could be estimated from a single sample, for example, and then used to speed up the convergence for other samples.
hist,flowClust-method

1-D Density Plot (Histogram) of Clustering Results
plot,flowClust-method

Scatterplot of Clustering Results
peakMatch

Function to match peaks across samples
flowClust-internal

Internal flowClust functions
ruleOutliers,flowClust-method

Showing or Modifying the Rule used to Identify Outliers
flowClust-package

Clustering for Flow Cytometry
rituximab

The Rituximab Dataset
plot,flowFrame,tmixFilterResult-method

Scatterplot / 1-D Density Plot of Filtering (Clustering) Results
plot,flowDens-method

Contour or Image Plot of Clustering Results
tmixFilter

Creating Filters and Filtering Flow Cytometry Data
Subset,flowClust-method

Subsetting Data Based on Clustering Results
summary,flowClust-method

Summary Method for flowClust Object
dmvt

Density of the Multivariate t Distribution with Box-Cox Tranformation
dmvtmix

Density of the Multivariate t Mixture Distribution with Box-Cox Tranformation
miscellaneous

Various Functions for Retrieving Information from Clustering Results
Map,flowClust-method

Cluster Assignment Based on Clustering Results
plotPrior

Plots a flowClust prior over some data.
rbox

Reverse Box-Cox Transformation
show,flowClust-method

Show Method for flowClust / tmixFilterResult Object
show,tmixFilter-method

Show Method for tmixFilter Object