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dclone (version 2.3-2)

Data Cloning and MCMC Tools for Maximum Likelihood Methods

Description

Low level functions for implementing maximum likelihood estimating procedures for complex models using data cloning and Bayesian Markov chain Monte Carlo methods as described in Solymos 2010 . Sequential and parallel MCMC support for 'JAGS', 'WinBUGS', 'OpenBUGS', and 'Stan'.

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Version

Install

install.packages('dclone')

Monthly Downloads

587

Version

2.3-2

License

GPL-2

Issues

3

Pull Requests

0

Stars

7

Forks

2

Maintainer

Peter Solymos

Last Published

July 3rd, 2023

Functions in dclone (2.3-2)

dc.parfit

Parallel model fitting with data cloning
codaSamples

Generate posterior samples in mcmc.list format
bugs.fit

Fit BUGS models with cloned data
clusterSplitSB

Size balancing
dc.fit

Iterative model fitting with data cloning
DcloneEnv

Manipulating dclone environments
bugs.parfit

Parallel computing with WinBUGS/OpenBUGS
mcmc.list-methods

Methods for the 'mcmc.list' class
clusterSize

Optimizing the number of workers
.dcFit

Internal function for iterative model fitting with data cloning
dcoptions

Setting Options
jags.parfit

Parallel computing with JAGS
errlines

Plot error bars
jags.fit

Fit JAGS models with cloned data
dctable

Retrieve descriptive statistics from fitted objects to evaluate convergence
evalParallelArgument

Evaluates parallel argument
lambdamax.diag

Data Cloning Diagnostics
jagsModel

Create a JAGS model object
dclone

Cloning R objects
dclone-package

Data Cloning
parJagsModel

Create a JAGS model object on parallel workers
parCodaSamples

Generate posterior samples in 'mcmc.list' format on parallel workers
parDosa

Parallel wrapper function to call from within a function
pairs.mcmc.list

Scatterplot Matrices for 'mcmc.list' Objects
ovenbird

Abundances of ovenbird in Alberta
nclones

Number of Clones
parallel.inits

Parallel RNGs for initial values
mcmcapply

Calculations on 'mcmc.list' objects
make.symmetric

Make a square matrix symmetric by averaging.
parLoadModule

Dynamically load JAGS modules on parallel workers
regmod

Exemplary MCMC list object
parSetFactory

Advanced control over JAGS on parallel workers
parUpdate

Update jags models on parallel workers
update.mcmc.list

Automatic updating of an MCMC object from JAGS
stan.fit

Fit Stan models with cloned data
write.jags.model

Write and remove model file
mclapplySB

Size balancing version of mclapply