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DEGseq (version 1.26.0)

Identify Differentially Expressed Genes from RNA-seq data

Description

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

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Version

Version

1.26.0

License

LGPL (>=2)

Maintainer

Likun Wang

Last Published

February 15th, 2017

Functions in DEGseq (1.26.0)

samWrapper

samWrapper: A Wrapper (with some modification) of the functions in the package samr to identify differentially expressed genes for the RNA-seq data from two groups of paired or unpaired samples.
GeneExpExample1000

GeneExpExample1000
DEGseq

DEGseq: Identify Differentially Expressed Genes from RNA-seq data
DEGexp2

DEGexp2: Identifying Differentially Expressed Genes from gene expression data
kidneyChr21Bowtie

kidneyChr21Bowtie
GeneExpExample5000

GeneExpExample5000
kidneyChr21.bed

kidneyChr21.bed
refFlatChr21

refFlatChr21
liverChr21Bowtie

liverChr21Bowtie
getGeneExp

getGeneExp: Count the number of reads and calculate the RPKM for each gene
readGeneExp

readGeneExp: read gene expression values to a matrix
DEGexp

DEGexp: Identifying Differentially Expressed Genes from gene expression data
liverChr21.bed

liverChr21.bed