Epidemiological rates for diabetes in Denmark 1996--2015
Epi: Functions for manipulation and statistical analysis of epidemiological data
Conversion to diabetes
Births in Denmark by year and month of birth and sex
Clinical status,
relapse, metastasis and death in 2982 women with breast cancer.
Fits a regression model to interval censored data.
Create a Lexis object of follow-up
Fit Lee-Carter-type models for rates to arbitrarily shaped observations
of rates in a Lexis diagram.
Set up an array of NAs, solely from the list of dimnames
Population size in Denmark
The Aalen-Johansen estimator of state probabilities from a
multistate Lexis
object.
Natural splines - (cubic splines linear beyond outermost knots) with
convenient specification of knots and possibility of centering,
detrending and clamping.
The Danish National Diabetes Register.
Mortality in Denmark 1974 ff.
Draw life lines in a Lexis diagram.
Compute dates/ages for life lines in a Lexis diagram
Function to compute and draw ROC-curves.
Convert a Lexis obejct to a data set suitable for input to the
msm:msm
function.
Create risk time ("Person-Years") in Lexis triangles from population count data.
Plot a Lexis diagram
A wrapper for termplot
that optionally (but by default)
exponentiates terms, and plot them on a common log-scale. Also scales
x-axes to the same physical scale.
Fit Age-Period-Cohort models and Lee-Carter models with effects
modeled by natural splines.
Reorder and combine levels of a factor
Add covariates (typically clinical measurements) taken at known times
to a Lexis object.
Produce an empty frame for display of parameter-estimates from
Age-Period-Cohort-models.
Population risk time in Denmark
Expand a Lexis object with information of drug exposure based on
purchase dates and -amounts
Fit an Age-Period-Cohort model to tabular data.
Salmonella Typhimurium outbreak 1996 in Denmark.
A case-control study of endometrial cancer
Compute cumulative risks and expected sojourn times from models for
cause-specific rates.
Births in a London Hospital
Create a bootstrap sample of persons (as identified by lex.id
) from a Lexis object
Bereavement in an elderly cohort
Bladder cancer mortality in Italian males
Compute cumulative sum of estimates.
Compute linear functions of parameters with standard errors and
confidence limits, optionally transforming to a different scale.
Draw boxes and arrows for illustration of multistate models.
Generate a nested case-control study
Functions to convert character, factor and various date objects into a number,
and vice versa.
Function to calculate effects for individually matched case-control studies
Compute survival functions from rates and expected residual
lifetime in an illness-death model as well as years of life lost to disease.
Conditional logistic regression
Contrast matrices
Compute confidence limits for a difference of two independent proportions.
Projection of a model matrix on the orthogonal
complement of a trend or curvature.
Cut follow-up at a specified date for each person.
Diet and heart data
Fit a competing risks regression model (Fine-Gray model) using a
Lexis object)
Function to calculate effects
Fit an additive excess risk model to interval censored data.
Generate covariates for drug-exposure follow-up from drug purchase records.
Population mortality rates for Denmark in 5-years age groups.
Fits a multiplicative relative risk model to interval censored data.
Calculate floated variances
Fit a piecewise contsnt intesity model for interval censored data.
Create a data structures suitable for use with packages mstate
or etm
.
Fit a floating trend to a factor in generalized linear model
Function to expand data for regression analysis of interval censored
data.
Male lung cancer incidence in Denmark
Plot columns of a matrix as stacked areas.
Rates of lung and nasal cancer mortality, and total mortality.
Draw a box with text explaining the numbers in and between boxes
from boxes.MS
and boxes.Lexis
Is x
in the column span of matrix A
and what columns are
linearly dependent?
Create a basis of harmonic functions.
Convenience versions of grep
An unmatched case-control study of leprosy incidence
Plot APC-estimates in an APC-frame.
hivDK: seroconversion in a cohort of Danish men
Nice breakpoints
Mantel-Haenszel analyses of cohort and case-control studies
Function to group a variable in intervals.
Merge a Lexis object with a data frame
A small occupational cohort
Functions to manage and explore the workspace
Fit intensity models to follow-up data in Lexis objects
A Cohort of Nickel Smelters in South Wales
Plot confidence intervals as shaded areas around lines.
Cut follow-up at multiple event dates and keep track of order of events
Population mortality rates for Denmark in 1-year age-classes.
Diabetes prevance as of 2010-01-01 in Denmark
Plot period and cohort effects in an APC-frame.
Plotting Aalen-Johansen curves for competing events
Plot estimates with confidence limits (forest plot)
Create percentages in a table
Plot the estimates from a fitted Age-Period-Cohort model
Plot Equivalence Classes
Projection of columns of a matrix.
Family Object for Poisson Regression
Lexis diagrams
A function to cut follow-up at intermediate event times.
Split follow-up time in a Lexis object
Simulate a Lexis object representing follow-up in a multistate
model.
Functions to plot rates from a table classified by age and
calendar time (period)
Functions to facilitate analysis of multistate models.
Tables of summary statistics
Remove transitions from a Lexis object.
Special functions for use in stat.table
Remove Lexis attributes from a Lexis
object.
Summarize transitions and risk time from a Lexis object
Transform a Lexis (or stacked.Lexis) object
The time scales of a Lexis object
Combining a Lexis objects with data frames or other Lexis objects
Analysis of a two by two table
Time series and other methods for Lexis objects
Testis cancer incidence in Denmark, 1943--1996
Clinical trial: Steno2 baseline and follow-up.
Extract time band data from a split Lexis object
Subsetting Lexis (and stacked.Lexis) objects
Thorotrast Study