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RNOmni (version 0.3.0)

Omnibus Test for Genetic Association Analysis using the Rank Normal Transformation

Description

Implementation of genetic association tests based on the rank based inverse normal transformation (INT). The primary contribution is an omnibus test, which synthesizes two complementary INT-based approaches. In simulations against phenotypes with skewed and heavy tailed residual distributions, the omnibus test provided valid inference in the absence of a genotypic effect, and provided power comparable to the more powerful of the component methods in the presence of a genotypic effect. Under these settings, standard linear regression often failed to control the type I error.

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Version

Install

install.packages('RNOmni')

Monthly Downloads

1,262

Version

0.3.0

License

GPL-3

Maintainer

Zachary McCaw

Last Published

April 18th, 2018

Functions in RNOmni (0.3.0)

fastInv

Matrix Inverse
vecQF

Quadratic Form
fastIP

Matrix Inner Product
vecCor

Correlation
rankNormal

Rank-Normalize
matQF

Matrix Quadratic Form
fastT

Matrix Transpose
fitNorm

Normal Model
fastMvp

Matrix vector product
SchurC

Schur complement
X

Simulated Covariates
inCheck

Input Check
fastDet

Matrix Determinant
incP

Incomplete projection
Y

Simulated Phenotypes
BAT

Basic Association Test
IINT0

Indirect-INT, Without Secondary Adjustment
OmniP

Omnibus P-value
AvgCorr

Average Correlation Estimate.
RNOmni

Rank-Normal Omnibus Test
IINT

Indirect-INT
DINT

Direct-INT
S

Population Structure Adjustments
BootCorr

Bootstrap Correlation Estimate.
G

Simulated Genotypes
fastMMp

Matrix matrix product