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RNOmni (version 0.4.0)

Omnibus Test for Genetic Association Analysis using the Rank Normal Transformation

Description

Implementation of genetic association tests using the rank based inverse normal transformation (INT). The primary contribution is an omnibus test, which synthesizes two complementary INT-based approaches. In simulations against phenotypes with skewed and heavy tailed residuals, the omnibus test provided valid inference in the absence of genetic effects. When genetic effects were present, the omnibus test provided power comparable to the more efficient of the component methods. Under these settings, standard linear regression variously failed to control the type I error in the absence of genetic effects, and was underpowered in the presence of genetic effects.

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Version

Install

install.packages('RNOmni')

Monthly Downloads

1,262

Version

0.4.0

License

GPL-3

Maintainer

Zachary McCaw

Last Published

May 16th, 2018

Functions in RNOmni (0.4.0)

Resid

Residual
AvgCorr

Average Correlation Estimate.
BAT

Basic Association Test
IINT

Indirect-INT
fastMMp

Matrix matrix product
rankNormal

Rank-Normalize
OmniP

Omnibus P-value
fastQF

Matrix Quadratic Form
X

Simulated Covariates
RNOmni

Rank-Normal Omnibus Test
SchurC

Schur complement
fastIP

Matrix Inner Product
olsB

Ordinary Least Squares Coeefficient
inCheck

Input Check
fastInv

Matrix Inverse
G

Simulated Genotypes
DINT

Direct-INT
fastDet

Matrix Determinant
vecCor

Correlation
BootCorr

Bootstrap Correlation Estimate.
S

Population Structure Adjustments
fastT

Matrix Transpose
fitNorm

Normal Model
Y

Simulated Phenotypes