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asbio (version 0.3-3)
A collection of statistical tools for biologists
Description
Contains functions from the book: "Applied Statistics for Biologists"
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Install
install.packages('asbio')
Monthly Downloads
2,140
Version
0.3-3
License
GPL (>= 2)
Maintainer
Ken Aho
Last Published
June 15th, 2010
Functions in asbio (0.3-3)
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alfalfa.split.plot
An agricultural split plot design
power.z.test
Power analysis for a one sample z-test
starkey
DEM data from the Starkey experimental forest in NE Oregon.
Hotelling
Hotelling T-squared test
beta.div
Beta diversity functions
e.cancer
Esophageal cancer data modified slightly to create a balanced three-way factorial design
get.dist
Calculates 26 possible resemblance measures.
exercise.repeated
Repeated measures data for an exercise experiment.
pseudo.v
Jacknife pseudo-values
trim.me
Trim data
D.sq
Mahalanobis distance for two sites using a pooled covariance matrix
km
Kaplan-Meier survivorship.
rat
Rat glycogen data from Sokal and Rohlf (1995).
anm.coin
Animated demonstration of frequentist binomial convergence of probability using a coin flip.
anm.samp.design
Animated demonstration of randomized sampling designs
rankindex.new
Compares the efficacy of resemblance measures for a particular data scenario.
Shep.comp
Shepard plot type comparisons for PCoA
partial.resid.plot
Partial residual plots for interpretation of multiple regression.
world.co2
World CO2 levels, by country, from 1980 to 2006
HL.mean
Hodges-Lehman estimator of location
MS.test
Mack-Skillings test
anm.ExpDesign
Animated depiction of experimental designs
bv.boxplot
Bivariate boxplots
modlevenes.test
Modified Levene's test
huber.NR
Huber M-estimator iterative least squares algorithm
stan.error
Variance and standard error estimators for the sampling distribution of the sample mean
panel.cor.res
functions for customizing correlation matrices
Pairw.test
Conducts pairwise post hoc tests associated with an ANOVA.
alpha.div
Functions for calculating alpha diversity.
win
Winsorize data
asthma
Asthma repeated measures dataset from Littell et al. (2002)
coin.flip
Demonstration of frequentist convergence of probability with a coin flip.
shade.norm.tck
GUI display of probability
world.pop
Population levels in various countries since 1980
cliff.env
Environmental data for the community dataset cliff.sp
runExpDesign
Simple experimental design plots
one.sample.z
One sample z-test
G.mean
Geometric mean
ci.mu.z
Z and t confidence intervals for mu.
H.mean
Harmonic mean
Preston.dist
Preston diversity analysis
chi.plot
Chi plots for diagnosing multivariate independence.
MC.test
Monte Carlo hypothesis testing for two samples.
bootstrap
A simple function for bootstrapping
radiation.heatl
Radiation-heatload algorithm
shade.norm
Shading functions for interpretation of pdf probabilities.
samp.dist
Animated representations of a statistic's sampling distribution
runSampDesign
Plots of random sampling designs