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binGroup2 (version 1.1.0)

Identification and Estimation using Group Testing

Description

Methods for the group testing identification problem: 1) Operating characteristics (e.g., expected number of tests) for commonly used hierarchical and array-based algorithms, and 2) Optimal testing configurations for these same algorithms. Calculations for algorithms with single-disease assays are described in Hitt et al. (2019) and with multiplex assays are described in Bilder et al. (2019) and Hou et al. (2020) . Methods for the group testing estimation problem: 1) Estimation and inference procedures for an overall prevalence, and 2) Regression modeling for commonly used hierarchical and array-based algorithms. Estimation and confidence interval methods are described in Biggerstaff (2008) and Hepworth & Biggerstaff (2017) . Regression modeling is described in Xie (2001) .

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Version

Install

install.packages('binGroup2')

Monthly Downloads

417

Version

1.1.0

License

GPL (>= 3)

Maintainer

Brianna Hitt

Last Published

March 17th, 2021

Functions in binGroup2 (1.1.0)

gtPower

Power to reject a hypothesis for one proportion in group testing
gtRegControl

Auxiliary for controlling group testing regression
binGroup2

binGroup2: Identification and Estimation using Group Testing
Sterrett

Summary measures for Sterrett algorithms
designEst

Optimal group size determination based on minimal MSE when estimating an overall prevalence
expectOrderBeta

Determine a vector of probabilities for informative group testing algorithms
OTC2

Find the optimal testing configuration for group testing algorithms that use a multiplex assay for two diseases
gtReg

Fitting group testing regression models
OTC1

Find the optimal testing configuration for group testing algorithms that use a single-disease assay
designPower

Number of groups or group size needed to achieve a power level in one parameter group testing
gtSim

Simulation function for group testing data
hivsurv

Data from an HIV surveillance project
informativeArrayProb

Arrange a matrix of probabilities for informative array testing
gtTest

Hypothesis test for one proportion in group testing
operatingCharacteristics2

Calculate operating characteristics for group testing algorithms that use a multiplex assay for two diseases
operatingCharacteristics1

Calculate operating characteristics for group testing algorithms that use a single-disease assay
gtWidth

Expected width of confidence intervals in group testing
summary.gtReg

Summary method for group testing regression model fits
summary.opChar

Summary method for operating characteristics results
halving

Probability mass function for halving
propCI

Confidence intervals for one proportion in group testing
print.summary.gtReg

Print method for summary.gtReg
propDiffCI

Confidence intervals for the difference of proportions in group testing
plot.OTC

Plot method for optimal testing configuration results
predict.gtReg

Predict method for group testing regression model fits
summary.OTC

Summary method for optimal testing configuration results
print.designPower

Print method for objects of class "designPower"
print.gtTest

Print method for objects of class "gtTest"
print.propDiffCI

Print method for objects of class "propDiffCI"
print.propCI

Print method for objects of class "propCI"