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bnlearn (version 4.9.1)

Bayesian Network Structure Learning, Parameter Learning and Inference

Description

Bayesian network structure learning, parameter learning and inference. This package implements constraint-based (PC, GS, IAMB, Inter-IAMB, Fast-IAMB, MMPC, Hiton-PC, HPC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing and Tabu Search) and hybrid (MMHC, RSMAX2, H2PC) structure learning algorithms for discrete, Gaussian and conditional Gaussian networks, along with many score functions and conditional independence tests. The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are also implemented. Some utility functions (model comparison and manipulation, random data generation, arc orientation testing, simple and advanced plots) are included, as well as support for parameter estimation (maximum likelihood and Bayesian) and inference, conditional probability queries, cross-validation, bootstrap and model averaging. Development snapshots with the latest bugfixes are available from .

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Version

Install

install.packages('bnlearn')

Monthly Downloads

25,548

Version

4.9.1

License

GPL (>= 2)

Maintainer

Last Published

December 5th, 2023

Functions in bnlearn (4.9.1)

bn.strength class

The bn.strength class structure

The bn.kcv class structure

constraint-based algorithms

Constraint-based structure learning algorithms

Construct configurations of discrete variables

Equivalence classes, moral graphs and consistent extensions

Perform conditional probability queries

foreign files utilities

Read and write BIF, NET, DSC and DOT files

Test d-separation

Plot fitted Bayesian networks

Coronary heart disease data set

graph utilities

Utilities to manipulate graphs

graph enumeration

Count graphs with specific characteristics

independence-tests

Conditional independence tests

graph generation utilities

Generate empty, complete or random graphs

Synthetic (continuous) data set to test learning algorithms

gRain integration

Import and export networks from the gRain package

Compare two or more different Bayesian networks

hybrid algorithms

Hybrid structure learning algorithms

score-based algorithms

Score-based structure learning algorithms

graph integration

Import and export networks from the graph package

Plotting networks with probability bars

local discovery algorithms

Local discovery structure learning algorithms

model string utilities

Build a model string from a Bayesian network and vice versa

Insurance evaluation network (synthetic) data set

igraph integration

Import and export networks from the igraph package

Compute the distance between two fitted Bayesian networks

data preprocessing

Pre-process data to better learn Bayesian networks

plot.bn.strength

Plot arc strengths derived from bootstrap

Plot a Bayesian network

multivariate normal distribution

Gaussian Bayesian networks and multivariate normals

Examination marks data set

Advanced Bayesian network plots

The HailFinder weather forecast system (synthetic) data set

Lizards' perching behaviour data set

Synthetic (discrete) data set to test learning algorithms

single-node local discovery

Discover the structure around a single node

Naive Bayes classifiers

predict and impute

Predict or impute missing data from a Bayesian network

Miscellaneous utilities

Score of the Bayesian network

Simulate random samples from a given Bayesian network

node ordering utilities

Partial node orderings

structure-learning

Structure learning algorithms

pcalg integration

Import and export networks from the pcalg package

whitelists-blacklists

Whitelists and blacklists in structure learning

Produce lm objects from Bayesian networks

node operations

Manipulate nodes in a graph

Arc strength plot

Structure learning from missing data

Manipulating the test counter

ROCR integration

Generating a prediction object for ROCR

Estimate the optimal imaginary sample size for BDe(u)

The bn class structure

Asia (synthetic) data set by Lauritzen and Spiegelhalter

ALARM monitoring system (synthetic) data set

Cross-validation for Bayesian networks

network-classifiers

Bayesian network Classifiers

Measure arc strength

bn.fit utilities

Utilities to manipulate fitted Bayesian networks

Independence and conditional independence tests

Fit the parameters of a Bayesian network

Drop, add or set the direction of an arc or an edge

Nonparametric bootstrap of Bayesian networks

clgaussian.test

Synthetic (mixed) data set to test learning algorithms

utilities for whitelists and blacklists

Get or create whitelists and blacklists

Bayes factor between two network structures

bnlearn-package

Bayesian network structure learning, parameter learning and inference

The bn.fit class structure