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embryogrowth (version 5.0)
Tools to analyze the thermal reaction norm of embryo growth
Description
Tools to analyze the thermal reaction norm of embryo growth
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Install
install.packages('embryogrowth')
Monthly Downloads
355
Version
5.0
License
GPL-2
Maintainer
Marc Girondot
Last Published
August 15th, 2014
Functions in embryogrowth (5.0)
Search all functions
embryogrowth_MHmcmc
Run the Metropolis-Hastings algorithm for data
ChangeSSM
Generate set of parameters for Schoolfield-Sharpe-Magnuson model
TestParallel
Estimate the likelihood of a set of parameters for nest incubation data with or without parallel computing option
hist.NestsResult
Show the histogram of temperatures with set of nests
GenerateTest
Generate a data.frame that can be used as test value for searchR()
likelihoodR
Estimate the likelihood of a set of parameters for nest incubation data
GenerateConstInc
Generate a data.frame with constant incubation temperature and incubation duration
weightmaxentropy
Search for the weights of the nests which maximize the entropy of nest temperatures distribution
MovingIncubation
Simulate incubation of a nest with the beginning of incubation varying
result_mcmc_newp
Result of the mcmc using the nest database with anchored parameters
result_mcmc_6p
Result of the mcmc using the nest database
dydt.Gompertz
Return the derivative of the Gompertz function
searchR
Fit the parameters that best represent nest incubation data.
resultNest_6p
Fit using the nest database
STSRE_TSD
Database of TSD information for marine turtles
plotR_hist
Shows the histogram of temperatures with set of nests and the R function superimpose
result_mcmc_4p
Result of the mcmc using the nest database
summary.Nests
Summarize the information from a Nests object.
result_mcmc_4p_weight
Result of the mcmc using the nest database
embryogrowth-package
The package embryogrowth
resultNest_4p_transition
Result of the fit using the nest database using transition
embryogrowth_MHmcmc_p
Generates set of parameters to be used with embryogrowth_MHmcmc()
logLik.tsd
Return Log Likelihood of a fit generated by tsd
info.nests
Calculte statistics about nests
logLik.NestsResult
Return Log Likelihood of a fit generated by searchR
resultNest_4p_weight
Fit using the nest database with weight
STSRE_NestingArea
Database of RMU for marine turtles
tempConst
Timeseries of constant temperatures for nests
dydt.exponential
Return the derivative of the exponential function
nest
Timeseries of temperatures for nests
GenerateAnchor
Generate a set of anchored parameters
switch.transition
Add a transition parameter on a set of parameters or remove it
resultNest_4p
Fit using the nest database
plot_transition
Show fonction used for transition
dydt.linear
Return the derivative of the linear function
tsd
Estimate the parameters that best describe temperature-dependent sex determination
merge.mcmcComposite
Merge two mcmcComposite results
plot.NestsResult
Plot the information about a nest
resultNest_newp
Fit using the nest database with anchored parameters
hist.Nests
Show the histogram of temperatures with set of nests
plotR
Show the fitted growth rate dependent on temperature
predict.tsd
Estimate sex ratio according to constant incubation temperature
FormatNests
Create a dataset of class Nests to be used with searchR