Rdocumentation
powered by
Learn R Programming
HEM (version 1.44.0)
Heterogeneous error model for identification of differentially expressed genes under multiple conditions
Description
This package fits heterogeneous error models for analysis of microarray data
Copy Link
Link to current version
Version
Version
1.44.0
1.42.0
1.40.0
1.38.0
Version
1.44.0
License
GPL (>= 2)
Maintainer
HyungJun Cho
Last Published
February 15th, 2017
Functions in HEM (1.44.0)
Search all functions
am.tran.half
AM transformation for LPE
hem.fdr
FDR Evaluation
am.tran
AM transformation for LPE
base.error.Olig
Baseline error estimation for oligonucleotide arrays
boot.base.ASE.Olig
Baseline error bootstrap estimation for oligonucleotide arrays
boot.base.PSE.Olig
Baseline error bootstrap estimation for oligonucleotide arrays
quant.normalize
Quantile normalization
base.PSE.Olig
Baseline PSE estimation for oligonucleotide arrays
quant.norm
Quantile normalization
fixbound.predict.smooth.spline
Prediction using smoothing spine
nonpar.error.Olig
Baseline error nonparametric estimation for oligonucleotide arrays
remove.sig.genes
Remove significant genes
mubcp
Gene expression data for mouse B cell development
nonpar.no.error.Olig
Baseline error nonparametric estimation for oligonucleotide arrays
hem.null.one
Generation of null data
par.no.error.Olig
Baseline error parametric estimation for oligonucleotide arrays
permut
Permutation
par.error.Olig
Baseline error parametric estimation for oligonucleotide arrays
nonpar.rep.error.Olig
Baseline error nonparametric estimation for oligonucleotide arrays
hem.null.two
Generation of null data
base.error.Olig.quanOnly
Baseline error estimation for oligonucleotide arrays
hem
Heterogeneous Error Model for Identification of Differential Expressed Genes Under Multiple Conditions
hem.preproc
Preprocessing
quant.normal
Normalization
par.rep.error.Olig
Baseline error parametric estimation for oligonucleotide arrays
quant.normal2
Normalization
base.ASE.Olig
Baseline ASE estimation for oligonucleotide arrays
boot.base.error.Olig
Baseline error bootstrap estimation for oligonucleotide arrays
pbrain
Gene expression data for primate brains
hem.eb.prior
Empirical Bayes (EB) Prior Specification
hem.null.no
Generation of null data