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mycobacrvR (version 1.1)

Integrative Immunoinformatics for Mycobacterial Diseases in R Platform

Description

The mycobacrvR package contains utilities to provide detailed information for B cell and T cell epitopes for predicted adhesins from various servers such as ABCpred, Bcepred, Bimas, Propred, NetMHC and IEDB. Please refer the URL below to download data files (data_mycobacrvR.zip) used in functions of this package.

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Version

Install

install.packages('mycobacrvR')

Monthly Downloads

255

Version

1.1

License

GPL-2

Maintainer

S Ramachandran

Last Published

May 13th, 2022

Functions in mycobacrvR (1.1)

bimas_nmer

Epitope prediction from Bimas server information
iedb_consensus_mhci_nmer

Epitope conservation prediction for MHCI using IEDB-consensus information
iedb_consensus_mhcii_nmer

Epitope conservation prediction for MHCII using IEDB-consensus information
iedb_arb_mhci_nmer

Epitope conservation prediction for MHCI using IEDB-ARB server information
allermatch

Filter Allergic/Non Allergic proteins using output of Allermatch
iedb_arb_mhcii_nmer

Epitope conservation prediction for MHCII using IEDB-ARB server information
netmhcNN_nmer

Epitope conservation prediction from NetMHC server 3.0 using artificial neural networks (ANNs)
netmhcWT_nmer

Epitope conservation prediction from NetMHC server 3.0 using weight matrices
bcepred_nmer

Epitope conservation prediction from Bcepred server information
propred_nmer

Epitope conservation prediction from Propred server information
abcpred_nmer

Epitope conservation prediction from ABCpred server information
algpred

Filter Allergic/Non Allergic proteins using output of Algpred
filter.firstlayer

Filter first layer data