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spdep (version 1.3-7)

Spatial Dependence: Weighting Schemes, Statistics

Description

A collection of functions to create spatial weights matrix objects from polygon 'contiguities', from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial 'autocorrelation', including global 'Morans I' and 'Gearys C' proposed by 'Cliff' and 'Ord' (1973, ISBN: 0850860369) and (1981, ISBN: 0850860814), 'Hubert/Mantel' general cross product statistic, Empirical Bayes estimates and 'Assunção/Reis' (1999) Index, 'Getis/Ord' G ('Getis' and 'Ord' 1992) and multicoloured join count statistics, 'APLE' ('Li 'et al.' ) , local 'Moran's I', 'Gearys C' ('Anselin' 1995) and 'Getis/Ord' G ('Ord' and 'Getis' 1995) , 'saddlepoint' approximations ('Tiefelsdorf' 2002) and exact tests for global and local 'Moran's I' ('Bivand et al.' 2009) and 'LOSH' local indicators of spatial heteroscedasticity ('Ord' and 'Getis') . The implementation of most of these measures is described in 'Bivand' and 'Wong' (2018) , with further extensions in 'Bivand' (2022) . 'Lagrange' multiplier tests for spatial dependence in linear models are provided ('Anselin et al'. 1996) , as are 'Rao' score tests for hypothesised spatial 'Durbin' models based on linear models ('Koley' and 'Bera' 2023) . From 'spdep' and 'spatialreg' versions >= 1.2-1, the model fitting functions previously present in this package are defunct in 'spdep' and may be found in 'spatialreg'.

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install.packages('spdep')

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36,884

Version

1.3-7

License

GPL (>= 2)

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Last Published

November 25th, 2024

Functions in spdep (1.3-7)

diffnb

Differences between neighbours lists
hotspot

Cluster Classifications for Local Indicators of Spatial Association and Local Indicators for Categorical Data
geary.test

Geary's C test for spatial autocorrelation
edit.nb

Interactive editing of neighbours lists
droplinks

Drop and add links in a neighbours list
eire

Eire data sets
globalG.test

Global G test for spatial autocorrelation
joincount.mc

Permutation test for same colour join count statistics
grid2nb

Construct neighbours for a GridTopology
geary

Compute Geary's C
lee.test

Lee's L test for spatial autocorrelation
lee.mc

Permutation test for Lee's L statistic
joincount.test

BB join count statistic for k-coloured factors
joincount.multi

BB, BW and Jtot join count statistic for k-coloured factors
lee

Compute Lee's statistic
licd_multi

Local Indicators for Categorical Data
graphneigh

Graph based spatial weights
local_joincount_bv

Calculate the local bivariate join count
knn2nb

Neighbours list from knn object
lm.morantest

Moran's I test for residual spatial autocorrelation
localGS

A local hotspot statistic for analysing multiscale datasets
knearneigh

K nearest neighbours for spatial weights
listw2sn

Spatial neighbour sparse representation
lm.morantest.sad

Saddlepoint approximation of global Moran's I test
lag.listw

Spatial lag of a numeric vector
include.self

Include self in neighbours list
geary.mc

Permutation test for Geary's C statistic
local_joincount_uni

Calculate the local univariate join count
lm.morantest.exact

Exact global Moran's I test
lm.LMtests

Rao's score (a.k.a Lagrange Multiplier) diagnostics for spatial dependence in linear models
localG

G and Gstar local spatial statistics
localC

Compute Local Geary statistic
mat2listw

Convert a square spatial weights matrix to a weights list object
moran

Compute Moran's I
moran.mc

Permutation test for Moran's I statistic
moran.plot

Moran scatterplot
localmoran_bv

Compute the Local Bivariate Moran's I Statistic
localmoran.sad

Saddlepoint approximation of local Moran's Ii tests
moran_bv

Compute the Global Bivariate Moran's I
moran.test

Moran's I test for spatial autocorrelation
nb2listwdist

Distance-based spatial weights for neighbours lists
nb2lines

Use vector files for import and export of weights
nb2listw

Spatial weights for neighbours lists
nbdists

Spatial link distance measures
nb2INLA

Output spatial neighbours for INLA
nb2mat

Spatial weights matrices for neighbours lists
mstree

Find the minimal spanning tree
nbcosts

Compute cost of edges
nb2WB

Output spatial weights for WinBUGS
poly2nb

Construct neighbours list from polygon list
p.adjustSP

Adjust local association measures' p-values
localmoran

Local Moran's I statistic
nb2blocknb

Block up neighbour list for location-less observations
localmoran.exact

Exact local Moran's Ii tests
plot.nb

Plot a neighbours list
plot.mst

Plot the Minimum Spanning Tree
probmap

Probability mapping for rates
nblag

Higher order neighbours lists
nb.set.operations

Set operations on neighborhood objects
Rotation

Rotate a set of point by a certain angle
plot.skater

Plot the object of skater class
prunecost

Compute cost of prune each edge
prunemst

Prune a Minimun Spanning Tree
read.gal

Read a GAL lattice file into a neighbours list
sp.correlogram

Spatial correlogram
spdep-defunct

Defunct Functions in Package spdep
subset.nb

Subset a neighbours list
write.nb.gal

Write a neighbours list as a GAL lattice file
subset.listw

Subset a spatial weights list
sp.mantel.mc

Mantel-Hubert spatial general cross product statistic
spdep

Return package version number
read.gwt2nb

Read and write spatial neighbour files
set.mcOption

Options for parallel support
set.spChkOption

Control checking of spatial object IDs
is.symmetric.nb

Test a neighbours list for symmetry
tri2nb

Neighbours list from tri object
summary.nb

Print and summary function for neighbours and weights lists
spweights.constants

Provides constants for spatial weights matrices
tolerance.nb

Function to construct edges based on a tolerance angle and a maximum distance
ssw

Compute the sum of dissimilarity
skater

Spatial 'K'luster Analysis by Tree Edge Removal
EBest

Global Empirical Bayes estimator
EBlocal

Local Empirical Bayes estimator
oldcol

Columbus OH spatial analysis data set - old numbering
LOSH.cs

Chi-square based test for local spatial heteroscedasticity
aggregate.nb

Aggregate a spatial neighbours object
LOSH

Local spatial heteroscedasticity
columbus

Columbus OH spatial analysis data set
airdist

Measure distance from plot
EBImoran.mc

Permutation test for empirical Bayes index
choynowski

Choynowski probability map values
card

Cardinalities for neighbours lists
autocov_dist

Distance-weighted autocovariate
bhicv

Data set with 4 life condition indices of Belo Horizonte region
SD.RStests

Rao's score and adjusted Rao's score tests of linear hypotheses for spatial Durbin and spatial Durbin error models
Graph Components

Depth First Search on Neighbor Lists
LOSH.mc

Bootstrapping-based test for local spatial heteroscedasticity
dnearneigh

Neighbourhood contiguity by distance
cell2nb

Generate neighbours list for grid cells