GMD (version 0.3.3)

cage: CAGE Data: Transcription Start Site Distributions (TSSDs) by CAGE tags

Description

Transcription Start Site Distributions (TSSDs) by CAGE tags.

Usage

cage
cagel

Details

cage is a list of 20 named TSSDs. cagel is a longer version of cage, with 50 named TSSDs.

References

Zhao et al (2011), "Systematic Clustering of Transcription Start Site Landscapes", PLoS ONE 6(8): e23409.

http://dx.plos.org/10.1371/journal.pone.0023409

See Also

gmdp and gmdm, with examples using cage. chipseq for histone marks by ChIP-seq reads.

Examples

help(cage)
data(cage)
class(cage)
length(cage)
names(cage)
## Not run: cage

data(cagel)
names(cagel)
## Not run: cagel